Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1495 and GFF1496 are separated by 2 nucleotides GFF1496 and GFF1497 are separated by 17 nucleotides GFF1497 and GFF1498 are separated by 47 nucleotides GFF1498 and GFF1499 are separated by 35 nucleotides
GFF1495 - Tricarboxylate transport protein TctC, at 344,401 to 345,387
GFF1495
GFF1496 - beta-lactamase domain protein, at 345,390 to 346,355
GFF1496
GFF1497 - 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), at 346,373 to 347,257
GFF1497
GFF1498 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4), at 347,305 to 348,093
GFF1498
GFF1499 - Glucarate dehydratase (EC 4.2.1.40), at 348,129 to 349,475
GFF1499
Position (kb) 346
347
348 Strain fitness (log2 ratio) -2
-1
0
1 at 345.675 kb on + strand, within GFF1496 at 346.077 kb on + strand, within GFF1496 at 346.159 kb on - strand, within GFF1496 at 346.917 kb on + strand, within GFF1497 at 346.917 kb on + strand, within GFF1497 at 347.178 kb on + strand at 347.178 kb on + strand at 347.178 kb on + strand at 347.178 kb on + strand at 347.179 kb on - strand at 347.179 kb on - strand at 347.179 kb on - strand at 347.277 kb on + strand at 347.277 kb on + strand at 347.277 kb on + strand at 347.287 kb on + strand at 347.287 kb on + strand at 347.287 kb on + strand at 347.287 kb on + strand at 347.288 kb on - strand at 347.591 kb on + strand, within GFF1498 at 347.591 kb on + strand, within GFF1498 at 347.592 kb on - strand, within GFF1498 at 347.592 kb on - strand, within GFF1498 at 347.592 kb on - strand, within GFF1498 at 347.771 kb on + strand, within GFF1498 at 347.771 kb on + strand, within GFF1498 at 347.772 kb on - strand, within GFF1498 at 347.772 kb on - strand, within GFF1498 at 347.772 kb on - strand, within GFF1498 at 347.828 kb on + strand, within GFF1498 at 347.828 kb on + strand, within GFF1498 at 347.828 kb on + strand, within GFF1498 at 347.942 kb on + strand, within GFF1498 at 347.942 kb on + strand, within GFF1498 at 348.229 kb on + strand at 348.230 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 345,675 + GFF1496 0.30 +0.1 346,077 + GFF1496 0.71 -0.3 346,159 - GFF1496 0.80 -0.1 346,917 + GFF1497 0.61 -0.9 346,917 + GFF1497 0.61 -1.1 347,178 + -0.0 347,178 + +0.4 347,178 + -0.2 347,178 + +0.3 347,179 - -1.2 347,179 - +0.2 347,179 - -0.3 347,277 + -0.7 347,277 + -0.0 347,277 + -0.4 347,287 + -2.5 347,287 + +0.3 347,287 + -1.1 347,287 + -0.5 347,288 - +0.3 347,591 + GFF1498 0.36 -0.4 347,591 + GFF1498 0.36 -0.5 347,592 - GFF1498 0.36 -1.1 347,592 - GFF1498 0.36 +0.4 347,592 - GFF1498 0.36 -0.3 347,771 + GFF1498 0.59 +0.1 347,771 + GFF1498 0.59 +0.1 347,772 - GFF1498 0.59 -0.1 347,772 - GFF1498 0.59 -0.3 347,772 - GFF1498 0.59 -0.1 347,828 + GFF1498 0.66 +0.1 347,828 + GFF1498 0.66 -0.1 347,828 + GFF1498 0.66 +0.2 347,942 + GFF1498 0.81 -0.2 347,942 + GFF1498 0.81 -0.4 348,229 + +0.3 348,230 - -0.6
Or see this region's nucleotide sequence