Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1407

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
268,816	+		GFF1406	0.67	+0.2
268,817	-		GFF1406	0.67	-1.2
269,179	+		GFF1406	0.86	+0.1
269,236	+		GFF1406	0.89	+0.1
269,237	-		GFF1406	0.89	+0.3
269,345	-				+0.2
269,705	+		GFF1407	0.29	+1.8
269,706	-		GFF1407	0.29	+0.2
269,706	-		GFF1407	0.29	-0.2
271,222	+		GFF1408	0.83	+0.4
271,223	-		GFF1408	0.83	+0.7
271,223	-		GFF1408	0.83	+1.2
271,223	-		GFF1408	0.83	+0.6
271,246	+		GFF1408	0.85	+0.5
271,246	+		GFF1408	0.85	+0.0
271,247	-		GFF1408	0.85	+0.2
271,247	-		GFF1408	0.85	-0.1