Experiment: Ying_all64 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1214 and GFF1215 are separated by 10 nucleotides GFF1215 and GFF1216 overlap by 4 nucleotides
GFF1214 - L-aspartate oxidase (EC 1.4.3.16), at 77,773 to 79,371
GFF1214
GFF1215 - Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) / Aminodeoxychorismate lyase (EC 4.1.3.38), at 79,382 to 81,160
GFF1215
GFF1216 - Quinolinate synthetase (EC 2.5.1.72), at 81,157 to 82,269
GFF1216
Position (kb) 79
80
81
82 Strain fitness (log2 ratio) -1
0
1
2 at 78.385 kb on + strand, within GFF1214 at 78.385 kb on + strand, within GFF1214 at 78.386 kb on - strand, within GFF1214 at 78.386 kb on - strand, within GFF1214 at 78.386 kb on - strand, within GFF1214 at 78.391 kb on + strand, within GFF1214 at 78.391 kb on + strand, within GFF1214 at 78.391 kb on + strand, within GFF1214 at 78.391 kb on + strand, within GFF1214 at 78.391 kb on + strand, within GFF1214 at 78.391 kb on + strand, within GFF1214 at 78.392 kb on - strand, within GFF1214 at 78.392 kb on - strand, within GFF1214 at 78.499 kb on + strand, within GFF1214 at 78.499 kb on + strand, within GFF1214 at 78.499 kb on + strand, within GFF1214 at 78.499 kb on + strand, within GFF1214 at 78.500 kb on - strand, within GFF1214 at 78.500 kb on - strand, within GFF1214 at 78.817 kb on + strand, within GFF1214 at 78.818 kb on - strand, within GFF1214 at 78.818 kb on - strand, within GFF1214 at 78.874 kb on + strand, within GFF1214 at 78.874 kb on + strand, within GFF1214 at 78.874 kb on + strand, within GFF1214 at 78.874 kb on + strand, within GFF1214 at 78.875 kb on - strand, within GFF1214 at 79.108 kb on + strand, within GFF1214 at 79.108 kb on + strand, within GFF1214 at 79.108 kb on + strand, within GFF1214 at 79.108 kb on + strand, within GFF1214 at 79.109 kb on - strand, within GFF1214 at 79.109 kb on - strand, within GFF1214 at 79.192 kb on + strand, within GFF1214 at 79.192 kb on + strand, within GFF1214 at 79.192 kb on + strand, within GFF1214 at 79.192 kb on + strand, within GFF1214 at 79.193 kb on - strand, within GFF1214 at 79.677 kb on + strand, within GFF1215 at 79.678 kb on - strand, within GFF1215 at 79.678 kb on - strand, within GFF1215 at 80.193 kb on + strand, within GFF1215 at 80.193 kb on + strand, within GFF1215 at 80.193 kb on + strand, within GFF1215 at 80.194 kb on - strand, within GFF1215 at 80.194 kb on - strand, within GFF1215 at 80.641 kb on - strand, within GFF1215 at 80.736 kb on + strand, within GFF1215 at 80.736 kb on + strand, within GFF1215 at 80.736 kb on + strand, within GFF1215 at 80.736 kb on + strand, within GFF1215 at 80.736 kb on + strand, within GFF1215 at 80.737 kb on - strand, within GFF1215 at 80.737 kb on - strand, within GFF1215 at 80.737 kb on - strand, within GFF1215 at 80.737 kb on - strand, within GFF1215 at 80.737 kb on - strand, within GFF1215 at 80.737 kb on - strand, within GFF1215 at 80.737 kb on - strand, within GFF1215 at 80.737 kb on - strand, within GFF1215 at 80.737 kb on - strand, within GFF1215 at 80.958 kb on + strand, within GFF1215 at 80.958 kb on + strand, within GFF1215 at 80.959 kb on - strand, within GFF1215 at 80.959 kb on - strand, within GFF1215 at 81.687 kb on - strand, within GFF1216 at 81.687 kb on - strand, within GFF1216 at 81.687 kb on - strand, within GFF1216 at 81.687 kb on - strand, within GFF1216 at 81.821 kb on + strand, within GFF1216 at 81.821 kb on + strand, within GFF1216 at 81.822 kb on - strand, within GFF1216 at 82.091 kb on + strand, within GFF1216 at 82.091 kb on + strand, within GFF1216 at 82.091 kb on + strand, within GFF1216 at 82.091 kb on + strand, within GFF1216 at 82.091 kb on + strand, within GFF1216 at 82.091 kb on + strand, within GFF1216 at 82.091 kb on + strand, within GFF1216 at 82.091 kb on + strand, within GFF1216 at 82.091 kb on + strand, within GFF1216 at 82.091 kb on + strand, within GFF1216 at 82.092 kb on - strand, within GFF1216 at 82.092 kb on - strand, within GFF1216 at 82.092 kb on - strand, within GFF1216 at 82.092 kb on - strand, within GFF1216 at 82.092 kb on - strand, within GFF1216 at 82.092 kb on - strand, within GFF1216 at 82.092 kb on - strand, within GFF1216 at 82.092 kb on - strand, within GFF1216 at 82.092 kb on - strand, within GFF1216 at 82.094 kb on + strand, within GFF1216 at 82.095 kb on - strand, within GFF1216 at 82.095 kb on - strand, within GFF1216
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2 remove 78,385 + GFF1214 0.38 -0.1 78,385 + GFF1214 0.38 +0.2 78,386 - GFF1214 0.38 +0.2 78,386 - GFF1214 0.38 +0.7 78,386 - GFF1214 0.38 +0.6 78,391 + GFF1214 0.39 +1.1 78,391 + GFF1214 0.39 +0.2 78,391 + GFF1214 0.39 +0.0 78,391 + GFF1214 0.39 -0.7 78,391 + GFF1214 0.39 +0.9 78,391 + GFF1214 0.39 +0.8 78,392 - GFF1214 0.39 -0.3 78,392 - GFF1214 0.39 +0.6 78,499 + GFF1214 0.45 +0.3 78,499 + GFF1214 0.45 -1.0 78,499 + GFF1214 0.45 -0.2 78,499 + GFF1214 0.45 -0.4 78,500 - GFF1214 0.45 +0.2 78,500 - GFF1214 0.45 -0.6 78,817 + GFF1214 0.65 -1.6 78,818 - GFF1214 0.65 +0.4 78,818 - GFF1214 0.65 -0.3 78,874 + GFF1214 0.69 -0.3 78,874 + GFF1214 0.69 +0.1 78,874 + GFF1214 0.69 -0.4 78,874 + GFF1214 0.69 -0.3 78,875 - GFF1214 0.69 +0.3 79,108 + GFF1214 0.83 -0.1 79,108 + GFF1214 0.83 -0.2 79,108 + GFF1214 0.83 -0.2 79,108 + GFF1214 0.83 -0.2 79,109 - GFF1214 0.84 -0.5 79,109 - GFF1214 0.84 -0.3 79,192 + GFF1214 0.89 -0.0 79,192 + GFF1214 0.89 +0.1 79,192 + GFF1214 0.89 +0.2 79,192 + GFF1214 0.89 +0.4 79,193 - GFF1214 0.89 +0.3 79,677 + GFF1215 0.17 -0.3 79,678 - GFF1215 0.17 +0.3 79,678 - GFF1215 0.17 +0.8 80,193 + GFF1215 0.46 +0.2 80,193 + GFF1215 0.46 +0.3 80,193 + GFF1215 0.46 -0.5 80,194 - GFF1215 0.46 +1.0 80,194 - GFF1215 0.46 +0.0 80,641 - GFF1215 0.71 +0.9 80,736 + GFF1215 0.76 -0.5 80,736 + GFF1215 0.76 +1.2 80,736 + GFF1215 0.76 +0.6 80,736 + GFF1215 0.76 +0.2 80,736 + GFF1215 0.76 -0.6 80,737 - GFF1215 0.76 +0.4 80,737 - GFF1215 0.76 -1.4 80,737 - GFF1215 0.76 -0.3 80,737 - GFF1215 0.76 +0.2 80,737 - GFF1215 0.76 -0.2 80,737 - GFF1215 0.76 -0.0 80,737 - GFF1215 0.76 -0.4 80,737 - GFF1215 0.76 -1.0 80,737 - GFF1215 0.76 +0.5 80,958 + GFF1215 0.89 +0.2 80,958 + GFF1215 0.89 +0.7 80,959 - GFF1215 0.89 +0.6 80,959 - GFF1215 0.89 +0.9 81,687 - GFF1216 0.48 -0.2 81,687 - GFF1216 0.48 -0.5 81,687 - GFF1216 0.48 -1.1 81,687 - GFF1216 0.48 +0.4 81,821 + GFF1216 0.60 +0.0 81,821 + GFF1216 0.60 +0.2 81,822 - GFF1216 0.60 +1.0 82,091 + GFF1216 0.84 +1.9 82,091 + GFF1216 0.84 -0.3 82,091 + GFF1216 0.84 +0.1 82,091 + GFF1216 0.84 -0.2 82,091 + GFF1216 0.84 +0.3 82,091 + GFF1216 0.84 -0.2 82,091 + GFF1216 0.84 -0.4 82,091 + GFF1216 0.84 -0.4 82,091 + GFF1216 0.84 +0.1 82,091 + GFF1216 0.84 +0.2 82,092 - GFF1216 0.84 +0.2 82,092 - GFF1216 0.84 -0.4 82,092 - GFF1216 0.84 +0.8 82,092 - GFF1216 0.84 -0.5 82,092 - GFF1216 0.84 +0.2 82,092 - GFF1216 0.84 +0.2 82,092 - GFF1216 0.84 +0.3 82,092 - GFF1216 0.84 +0.4 82,092 - GFF1216 0.84 -0.0 82,094 + GFF1216 0.84 +1.0 82,095 - GFF1216 0.84 +0.2 82,095 - GFF1216 0.84 -0.5
Or see this region's nucleotide sequence