Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1192

Experiment: Ying_all64 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1190 and GFF1191 are separated by 10 nucleotidesGFF1191 and GFF1192 overlap by 4 nucleotidesGFF1192 and GFF1193 are separated by 10 nucleotides GFF1190 - Formate dehydrogenase -O, gamma subunit (EC 1.2.1.2), at 47,777 to 49,012 GFF1190 GFF1191 - putative lipoprotein, at 49,023 to 49,277 GFF1191 GFF1192 - Formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); Putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2), at 49,274 to 49,876 GFF1192 GFF1193 - Formate dehydrogenase-O, major subunit (EC 1.2.1.2), at 49,887 to 52,856 GFF1193 Position (kb) 49 50Strain fitness (log2 ratio) -1 0 1 2at 48.453 kb on + strand, within GFF1190at 48.454 kb on - strand, within GFF1190at 48.454 kb on - strand, within GFF1190at 48.454 kb on - strand, within GFF1190at 48.454 kb on - strand, within GFF1190at 48.519 kb on + strand, within GFF1190at 48.520 kb on - strand, within GFF1190at 48.520 kb on - strand, within GFF1190at 48.636 kb on + strand, within GFF1190at 48.636 kb on + strand, within GFF1190at 48.691 kb on - strand, within GFF1190at 48.699 kb on - strand, within GFF1190at 48.699 kb on - strand, within GFF1190at 48.699 kb on - strand, within GFF1190at 49.051 kb on + strand, within GFF1191at 49.051 kb on + strand, within GFF1191at 49.052 kb on - strand, within GFF1191at 49.052 kb on - strand, within GFF1191at 49.052 kb on - strand, within GFF1191at 49.066 kb on + strand, within GFF1191at 49.066 kb on + strand, within GFF1191at 49.066 kb on + strand, within GFF1191at 49.067 kb on - strand, within GFF1191at 49.135 kb on + strand, within GFF1191at 49.135 kb on + strand, within GFF1191at 49.136 kb on - strand, within GFF1191at 49.136 kb on - strand, within GFF1191at 49.159 kb on + strand, within GFF1191at 49.160 kb on - strand, within GFF1191at 49.303 kb on - strandat 49.303 kb on - strandat 49.303 kb on - strandat 49.464 kb on + strand, within GFF1192at 49.465 kb on - strand, within GFF1192at 49.593 kb on + strand, within GFF1192at 49.594 kb on - strand, within GFF1192at 49.594 kb on - strand, within GFF1192at 49.659 kb on + strand, within GFF1192at 49.659 kb on + strand, within GFF1192at 49.659 kb on + strand, within GFF1192at 49.659 kb on + strand, within GFF1192at 49.659 kb on + strand, within GFF1192at 49.659 kb on + strand, within GFF1192at 49.660 kb on - strand, within GFF1192at 49.660 kb on - strand, within GFF1192at 49.660 kb on - strand, within GFF1192at 49.948 kb on + strandat 49.949 kb on - strandat 49.949 kb on - strandat 49.949 kb on - strandat 49.949 kb on - strandat 49.952 kb on + strandat 49.954 kb on + strandat 49.954 kb on + strandat 49.954 kb on + strandat 49.954 kb on + strandat 49.954 kb on + strandat 49.954 kb on + strandat 49.954 kb on + strandat 49.954 kb on + strandat 49.955 kb on - strandat 49.955 kb on - strandat 49.955 kb on - strandat 50.011 kb on + strandat 50.011 kb on + strandat 50.011 kb on + strandat 50.014 kb on + strandat 50.014 kb on + strandat 50.014 kb on + strandat 50.014 kb on + strandat 50.015 kb on - strandat 50.015 kb on - strandat 50.015 kb on - strandat 50.015 kb on - strandat 50.264 kb on - strand, within GFF1193at 50.347 kb on + strand, within GFF1193at 50.347 kb on + strand, within GFF1193at 50.347 kb on + strand, within GFF1193at 50.347 kb on + strand, within GFF1193at 50.348 kb on - strand, within GFF1193at 50.348 kb on - strand, within GFF1193at 50.348 kb on - strand, within GFF1193at 50.390 kb on + strand, within GFF1193at 50.390 kb on + strand, within GFF1193at 50.390 kb on + strand, within GFF1193at 50.390 kb on + strand, within GFF1193at 50.395 kb on + strand, within GFF1193at 50.395 kb on + strand, within GFF1193at 50.395 kb on + strand, within GFF1193at 50.395 kb on + strand, within GFF1193at 50.395 kb on + strand, within GFF1193at 50.395 kb on + strand, within GFF1193at 50.395 kb on + strand, within GFF1193at 50.395 kb on + strand, within GFF1193at 50.396 kb on - strand, within GFF1193at 50.396 kb on - strand, within GFF1193at 50.396 kb on - strand, within GFF1193at 50.396 kb on - strand, within GFF1193at 50.396 kb on - strand, within GFF1193at 50.396 kb on - strand, within GFF1193at 50.396 kb on - strand, within GFF1193at 50.396 kb on - strand, within GFF1193at 50.425 kb on + strand, within GFF1193at 50.425 kb on + strand, within GFF1193at 50.425 kb on + strand, within GFF1193at 50.425 kb on + strand, within GFF1193at 50.426 kb on - strand, within GFF1193at 50.426 kb on - strand, within GFF1193at 50.426 kb on - strand, within GFF1193at 50.677 kb on + strand, within GFF1193at 50.776 kb on + strand, within GFF1193at 50.776 kb on + strand, within GFF1193at 50.776 kb on + strand, within GFF1193at 50.776 kb on + strand, within GFF1193at 50.776 kb on + strand, within GFF1193at 50.819 kb on - strand, within GFF1193at 50.819 kb on - strand, within GFF1193at 50.842 kb on + strand, within GFF1193at 50.843 kb on - strand, within GFF1193at 50.860 kb on + strand, within GFF1193

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2
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48,453 + GFF1190 0.55 +0.1
48,454 - GFF1190 0.55 -0.3
48,454 - GFF1190 0.55 -0.0
48,454 - GFF1190 0.55 -0.1
48,454 - GFF1190 0.55 -0.8
48,519 + GFF1190 0.60 -1.3
48,520 - GFF1190 0.60 -0.1
48,520 - GFF1190 0.60 -0.1
48,636 + GFF1190 0.69 +0.7
48,636 + GFF1190 0.69 +0.2
48,691 - GFF1190 0.74 +1.4
48,699 - GFF1190 0.75 -0.2
48,699 - GFF1190 0.75 -0.9
48,699 - GFF1190 0.75 -0.0
49,051 + GFF1191 0.11 +1.6
49,051 + GFF1191 0.11 +1.0
49,052 - GFF1191 0.11 +0.8
49,052 - GFF1191 0.11 -0.3
49,052 - GFF1191 0.11 +0.3
49,066 + GFF1191 0.17 -0.3
49,066 + GFF1191 0.17 -0.5
49,066 + GFF1191 0.17 +0.1
49,067 - GFF1191 0.17 -0.4
49,135 + GFF1191 0.44 +0.6
49,135 + GFF1191 0.44 +0.1
49,136 - GFF1191 0.44 +0.8
49,136 - GFF1191 0.44 -0.6
49,159 + GFF1191 0.53 -0.3
49,160 - GFF1191 0.54 +0.1
49,303 - +0.2
49,303 - +0.6
49,303 - -0.9
49,464 + GFF1192 0.32 +1.8
49,465 - GFF1192 0.32 +1.6
49,593 + GFF1192 0.53 -0.3
49,594 - GFF1192 0.53 +0.5
49,594 - GFF1192 0.53 +0.7
49,659 + GFF1192 0.64 +0.9
49,659 + GFF1192 0.64 +1.4
49,659 + GFF1192 0.64 -0.4
49,659 + GFF1192 0.64 -1.6
49,659 + GFF1192 0.64 -0.4
49,659 + GFF1192 0.64 +0.0
49,660 - GFF1192 0.64 +0.2
49,660 - GFF1192 0.64 +0.7
49,660 - GFF1192 0.64 +1.0
49,948 + +0.9
49,949 - -1.5
49,949 - +0.3
49,949 - +0.7
49,949 - +0.1
49,952 + +0.1
49,954 + +0.2
49,954 + -0.2
49,954 + -0.0
49,954 + -0.0
49,954 + -0.1
49,954 + -0.8
49,954 + +1.4
49,954 + -0.1
49,955 - +0.3
49,955 - -0.2
49,955 - -0.2
50,011 + -0.3
50,011 + -0.0
50,011 + +0.6
50,014 + -0.4
50,014 + -0.3
50,014 + +0.2
50,014 + -0.1
50,015 - -0.1
50,015 - -0.0
50,015 - -0.2
50,015 - -0.3
50,264 - GFF1193 0.13 -1.0
50,347 + GFF1193 0.15 +0.0
50,347 + GFF1193 0.15 +0.1
50,347 + GFF1193 0.15 -0.1
50,347 + GFF1193 0.15 -0.4
50,348 - GFF1193 0.16 +0.2
50,348 - GFF1193 0.16 +0.6
50,348 - GFF1193 0.16 -0.0
50,390 + GFF1193 0.17 +0.2
50,390 + GFF1193 0.17 +0.3
50,390 + GFF1193 0.17 -0.1
50,390 + GFF1193 0.17 +0.0
50,395 + GFF1193 0.17 -0.2
50,395 + GFF1193 0.17 -0.4
50,395 + GFF1193 0.17 -0.3
50,395 + GFF1193 0.17 -0.6
50,395 + GFF1193 0.17 -0.8
50,395 + GFF1193 0.17 +0.6
50,395 + GFF1193 0.17 +1.0
50,395 + GFF1193 0.17 +0.3
50,396 - GFF1193 0.17 -0.8
50,396 - GFF1193 0.17 -0.3
50,396 - GFF1193 0.17 +0.2
50,396 - GFF1193 0.17 -0.6
50,396 - GFF1193 0.17 -0.2
50,396 - GFF1193 0.17 -0.4
50,396 - GFF1193 0.17 -0.1
50,396 - GFF1193 0.17 +0.2
50,425 + GFF1193 0.18 -0.1
50,425 + GFF1193 0.18 +0.2
50,425 + GFF1193 0.18 -0.3
50,425 + GFF1193 0.18 -0.6
50,426 - GFF1193 0.18 -0.2
50,426 - GFF1193 0.18 -0.4
50,426 - GFF1193 0.18 -0.7
50,677 + GFF1193 0.27 +1.6
50,776 + GFF1193 0.30 +0.2
50,776 + GFF1193 0.30 -0.5
50,776 + GFF1193 0.30 +0.5
50,776 + GFF1193 0.30 -0.1
50,776 + GFF1193 0.30 -0.3
50,819 - GFF1193 0.31 -0.9
50,819 - GFF1193 0.31 +0.4
50,842 + GFF1193 0.32 -0.3
50,843 - GFF1193 0.32 -0.1
50,860 + GFF1193 0.33 +0.3

Or see this region's nucleotide sequence