Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1062

Experiment: Ying_all64 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1061 and GFF1062 are separated by 279 nucleotidesGFF1062 and GFF1063 overlap by 4 nucleotides GFF1061 - Aerotaxis sensor receptor protein, at 802,143 to 803,627 GFF1061 GFF1062 - Sensory box sensor histidine kinase/response regulator, at 803,907 to 806,171 GFF1062 GFF1063 - hypothetical protein, at 806,168 to 806,518 GFF1063 Position (kb) 803 804 805 806 807Strain fitness (log2 ratio) -2 -1 0 1 2at 802.967 kb on + strand, within GFF1061at 802.967 kb on + strand, within GFF1061at 802.968 kb on - strand, within GFF1061at 802.968 kb on - strand, within GFF1061at 802.968 kb on - strand, within GFF1061at 803.038 kb on + strand, within GFF1061at 803.039 kb on - strand, within GFF1061at 803.039 kb on - strand, within GFF1061at 803.039 kb on - strand, within GFF1061at 803.039 kb on - strand, within GFF1061at 803.039 kb on - strand, within GFF1061at 803.039 kb on - strand, within GFF1061at 803.047 kb on + strand, within GFF1061at 803.175 kb on + strand, within GFF1061at 803.356 kb on + strand, within GFF1061at 803.356 kb on + strand, within GFF1061at 803.356 kb on + strand, within GFF1061at 803.356 kb on + strand, within GFF1061at 803.356 kb on + strand, within GFF1061at 803.357 kb on - strand, within GFF1061at 803.357 kb on - strand, within GFF1061at 803.357 kb on - strand, within GFF1061at 803.357 kb on - strand, within GFF1061at 803.357 kb on - strand, within GFF1061at 803.357 kb on - strand, within GFF1061at 803.357 kb on - strand, within GFF1061at 803.357 kb on - strand, within GFF1061at 803.357 kb on - strand, within GFF1061at 803.368 kb on - strand, within GFF1061at 803.368 kb on - strand, within GFF1061at 803.411 kb on - strand, within GFF1061at 803.411 kb on - strand, within GFF1061at 803.438 kb on + strand, within GFF1061at 803.561 kb on - strandat 803.594 kb on - strandat 803.600 kb on + strandat 803.601 kb on - strandat 803.602 kb on - strandat 803.675 kb on + strandat 803.805 kb on + strandat 803.891 kb on + strandat 803.892 kb on - strandat 803.896 kb on + strandat 803.897 kb on - strandat 803.940 kb on - strandat 803.940 kb on - strandat 803.940 kb on - strandat 803.940 kb on - strandat 804.109 kb on + strandat 804.110 kb on - strandat 804.110 kb on - strandat 804.291 kb on + strand, within GFF1062at 804.291 kb on + strand, within GFF1062at 804.292 kb on - strand, within GFF1062at 804.292 kb on - strand, within GFF1062at 804.292 kb on - strand, within GFF1062at 804.538 kb on + strand, within GFF1062at 804.649 kb on + strand, within GFF1062at 804.649 kb on + strand, within GFF1062at 804.649 kb on + strand, within GFF1062at 804.649 kb on + strand, within GFF1062at 804.650 kb on - strand, within GFF1062at 804.650 kb on - strand, within GFF1062at 804.650 kb on - strand, within GFF1062at 804.650 kb on - strand, within GFF1062at 804.650 kb on - strand, within GFF1062at 804.925 kb on + strand, within GFF1062at 804.925 kb on + strand, within GFF1062at 804.925 kb on + strand, within GFF1062at 804.926 kb on - strand, within GFF1062at 804.926 kb on - strand, within GFF1062at 804.926 kb on - strand, within GFF1062at 804.926 kb on - strand, within GFF1062at 804.926 kb on - strand, within GFF1062at 804.926 kb on - strand, within GFF1062at 804.926 kb on - strand, within GFF1062at 805.061 kb on - strand, within GFF1062at 805.336 kb on + strand, within GFF1062at 805.336 kb on + strand, within GFF1062at 805.336 kb on + strand, within GFF1062at 805.336 kb on + strand, within GFF1062at 805.336 kb on + strand, within GFF1062at 805.336 kb on + strand, within GFF1062at 805.337 kb on - strand, within GFF1062at 805.337 kb on - strand, within GFF1062at 805.364 kb on + strand, within GFF1062at 805.519 kb on + strand, within GFF1062at 805.520 kb on - strand, within GFF1062at 805.582 kb on - strand, within GFF1062at 805.648 kb on - strand, within GFF1062at 805.648 kb on - strand, within GFF1062at 805.648 kb on - strand, within GFF1062at 805.682 kb on + strand, within GFF1062at 805.682 kb on + strand, within GFF1062at 805.682 kb on + strand, within GFF1062at 805.683 kb on - strand, within GFF1062at 805.987 kb on + strandat 805.988 kb on - strandat 805.988 kb on - strandat 805.999 kb on + strandat 805.999 kb on + strandat 805.999 kb on + strandat 806.000 kb on - strandat 806.000 kb on - strandat 806.174 kb on + strandat 806.211 kb on + strand, within GFF1063at 806.211 kb on + strand, within GFF1063at 806.211 kb on + strand, within GFF1063at 806.211 kb on + strand, within GFF1063at 806.211 kb on + strand, within GFF1063at 806.211 kb on + strand, within GFF1063at 806.211 kb on + strand, within GFF1063at 806.211 kb on + strand, within GFF1063at 806.211 kb on + strand, within GFF1063at 806.211 kb on + strand, within GFF1063at 806.212 kb on - strand, within GFF1063at 806.212 kb on - strand, within GFF1063at 806.212 kb on - strand, within GFF1063at 806.212 kb on - strand, within GFF1063at 806.212 kb on - strand, within GFF1063at 806.215 kb on - strand, within GFF1063at 806.215 kb on - strand, within GFF1063at 806.215 kb on - strand, within GFF1063at 806.239 kb on + strand, within GFF1063at 806.239 kb on + strand, within GFF1063at 806.239 kb on + strand, within GFF1063at 806.239 kb on + strand, within GFF1063at 806.240 kb on - strand, within GFF1063at 806.240 kb on - strand, within GFF1063at 806.240 kb on - strand, within GFF1063at 806.253 kb on + strand, within GFF1063at 806.253 kb on + strand, within GFF1063at 806.253 kb on + strand, within GFF1063at 806.253 kb on + strand, within GFF1063at 806.253 kb on + strand, within GFF1063at 806.253 kb on + strand, within GFF1063at 806.254 kb on - strand, within GFF1063at 806.254 kb on - strand, within GFF1063at 806.364 kb on + strand, within GFF1063at 806.364 kb on + strand, within GFF1063at 806.364 kb on + strand, within GFF1063at 806.364 kb on + strand, within GFF1063at 806.364 kb on + strand, within GFF1063at 806.364 kb on + strand, within GFF1063at 806.365 kb on - strand, within GFF1063at 806.365 kb on - strand, within GFF1063at 806.410 kb on + strand, within GFF1063at 806.410 kb on + strand, within GFF1063at 806.410 kb on + strand, within GFF1063at 806.410 kb on + strand, within GFF1063at 806.411 kb on - strand, within GFF1063at 806.411 kb on - strand, within GFF1063at 806.411 kb on - strand, within GFF1063at 806.411 kb on - strand, within GFF1063at 806.411 kb on - strand, within GFF1063at 806.684 kb on + strandat 806.684 kb on + strandat 806.685 kb on - strandat 806.714 kb on + strandat 806.714 kb on + strandat 806.715 kb on - strandat 806.715 kb on - strandat 806.827 kb on - strandat 806.912 kb on + strandat 806.912 kb on + strandat 806.979 kb on + strandat 806.980 kb on - strandat 807.054 kb on + strandat 807.055 kb on - strandat 807.056 kb on + strandat 807.057 kb on - strandat 807.068 kb on + strandat 807.069 kb on - strandat 807.107 kb on + strandat 807.107 kb on + strandat 807.108 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 2
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802,967 + GFF1061 0.55 -0.1
802,967 + GFF1061 0.55 +0.0
802,968 - GFF1061 0.56 +1.0
802,968 - GFF1061 0.56 +0.7
802,968 - GFF1061 0.56 +0.5
803,038 + GFF1061 0.60 +0.1
803,039 - GFF1061 0.60 +0.0
803,039 - GFF1061 0.60 +0.3
803,039 - GFF1061 0.60 -0.1
803,039 - GFF1061 0.60 +0.4
803,039 - GFF1061 0.60 -0.2
803,039 - GFF1061 0.60 -0.4
803,047 + GFF1061 0.61 +1.0
803,175 + GFF1061 0.69 -0.4
803,356 + GFF1061 0.82 +0.3
803,356 + GFF1061 0.82 +0.0
803,356 + GFF1061 0.82 -0.6
803,356 + GFF1061 0.82 +0.5
803,356 + GFF1061 0.82 -0.3
803,357 - GFF1061 0.82 +0.2
803,357 - GFF1061 0.82 -0.5
803,357 - GFF1061 0.82 -0.8
803,357 - GFF1061 0.82 -0.2
803,357 - GFF1061 0.82 -0.4
803,357 - GFF1061 0.82 +0.1
803,357 - GFF1061 0.82 +0.9
803,357 - GFF1061 0.82 -0.3
803,357 - GFF1061 0.82 -0.6
803,368 - GFF1061 0.82 +1.0
803,368 - GFF1061 0.82 +0.1
803,411 - GFF1061 0.85 -0.5
803,411 - GFF1061 0.85 +0.0
803,438 + GFF1061 0.87 -0.1
803,561 - -1.6
803,594 - -0.3
803,600 + +0.3
803,601 - -0.4
803,602 - -0.4
803,675 + -0.6
803,805 + +0.7
803,891 + -0.8
803,892 - +0.5
803,896 + -0.4
803,897 - +1.5
803,940 - +0.5
803,940 - +1.1
803,940 - +0.3
803,940 - +0.1
804,109 + -0.5
804,110 - -0.7
804,110 - -1.1
804,291 + GFF1062 0.17 -0.8
804,291 + GFF1062 0.17 -0.0
804,292 - GFF1062 0.17 +0.8
804,292 - GFF1062 0.17 -0.5
804,292 - GFF1062 0.17 +0.3
804,538 + GFF1062 0.28 +0.1
804,649 + GFF1062 0.33 -0.2
804,649 + GFF1062 0.33 +0.1
804,649 + GFF1062 0.33 -0.3
804,649 + GFF1062 0.33 +0.1
804,650 - GFF1062 0.33 -0.1
804,650 - GFF1062 0.33 +1.4
804,650 - GFF1062 0.33 -0.1
804,650 - GFF1062 0.33 -0.2
804,650 - GFF1062 0.33 +0.3
804,925 + GFF1062 0.45 -0.1
804,925 + GFF1062 0.45 +0.2
804,925 + GFF1062 0.45 +0.2
804,926 - GFF1062 0.45 +0.2
804,926 - GFF1062 0.45 +1.8
804,926 - GFF1062 0.45 -0.3
804,926 - GFF1062 0.45 -0.1
804,926 - GFF1062 0.45 -0.3
804,926 - GFF1062 0.45 -0.5
804,926 - GFF1062 0.45 +0.1
805,061 - GFF1062 0.51 -0.3
805,336 + GFF1062 0.63 -0.3
805,336 + GFF1062 0.63 +0.4
805,336 + GFF1062 0.63 -0.1
805,336 + GFF1062 0.63 -0.1
805,336 + GFF1062 0.63 -0.1
805,336 + GFF1062 0.63 +0.3
805,337 - GFF1062 0.63 +0.3
805,337 - GFF1062 0.63 +0.4
805,364 + GFF1062 0.64 +0.6
805,519 + GFF1062 0.71 -0.3
805,520 - GFF1062 0.71 +0.4
805,582 - GFF1062 0.74 +0.5
805,648 - GFF1062 0.77 -0.6
805,648 - GFF1062 0.77 +0.4
805,648 - GFF1062 0.77 +0.4
805,682 + GFF1062 0.78 +0.2
805,682 + GFF1062 0.78 +0.7
805,682 + GFF1062 0.78 -0.1
805,683 - GFF1062 0.78 +0.3
805,987 + +0.2
805,988 - -0.2
805,988 - +0.2
805,999 + +0.5
805,999 + -0.5
805,999 + +0.5
806,000 - +0.0
806,000 - -0.1
806,174 + +0.5
806,211 + GFF1063 0.12 +0.0
806,211 + GFF1063 0.12 -0.6
806,211 + GFF1063 0.12 -0.3
806,211 + GFF1063 0.12 -0.3
806,211 + GFF1063 0.12 -0.6
806,211 + GFF1063 0.12 +0.5
806,211 + GFF1063 0.12 -0.5
806,211 + GFF1063 0.12 +0.0
806,211 + GFF1063 0.12 +0.8
806,211 + GFF1063 0.12 -0.3
806,212 - GFF1063 0.13 +0.9
806,212 - GFF1063 0.13 +0.5
806,212 - GFF1063 0.13 +0.0
806,212 - GFF1063 0.13 -0.2
806,212 - GFF1063 0.13 -0.1
806,215 - GFF1063 0.13 -0.7
806,215 - GFF1063 0.13 +0.3
806,215 - GFF1063 0.13 -0.2
806,239 + GFF1063 0.20 -0.4
806,239 + GFF1063 0.20 +0.1
806,239 + GFF1063 0.20 -0.9
806,239 + GFF1063 0.20 +0.5
806,240 - GFF1063 0.21 +0.3
806,240 - GFF1063 0.21 +0.3
806,240 - GFF1063 0.21 -0.7
806,253 + GFF1063 0.24 +0.3
806,253 + GFF1063 0.24 -0.1
806,253 + GFF1063 0.24 +0.4
806,253 + GFF1063 0.24 -0.2
806,253 + GFF1063 0.24 -0.9
806,253 + GFF1063 0.24 -0.8
806,254 - GFF1063 0.25 +0.6
806,254 - GFF1063 0.25 +0.1
806,364 + GFF1063 0.56 -0.4
806,364 + GFF1063 0.56 -0.1
806,364 + GFF1063 0.56 -0.8
806,364 + GFF1063 0.56 -0.9
806,364 + GFF1063 0.56 +0.4
806,364 + GFF1063 0.56 -0.0
806,365 - GFF1063 0.56 +0.0
806,365 - GFF1063 0.56 +0.3
806,410 + GFF1063 0.69 -0.4
806,410 + GFF1063 0.69 -0.0
806,410 + GFF1063 0.69 -0.7
806,410 + GFF1063 0.69 -0.0
806,411 - GFF1063 0.69 +0.6
806,411 - GFF1063 0.69 -0.2
806,411 - GFF1063 0.69 -0.9
806,411 - GFF1063 0.69 -0.3
806,411 - GFF1063 0.69 +0.1
806,684 + +0.4
806,684 + -0.2
806,685 - +0.3
806,714 + -1.0
806,714 + -0.5
806,715 - +0.1
806,715 - +0.1
806,827 - -0.5
806,912 + +0.3
806,912 + -0.2
806,979 + -2.2
806,980 - -0.4
807,054 + -0.8
807,055 - +0.2
807,056 + -0.5
807,057 - +0.4
807,068 + +1.0
807,069 - -0.1
807,107 + -0.0
807,107 + -0.1
807,108 - -0.2

Or see this region's nucleotide sequence