Experiment: Supernatant; Pseudomonas DC3000 grown in LB; 0.1 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt COO64_RS26165 and COO64_RS26170 overlap by 1 nucleotides COO64_RS26170 and bglX are separated by 182 nucleotides bglX and COO64_RS26180 are separated by 60 nucleotides
COO64_RS26165: COO64_RS26165 - YgcG family protein, at 1 to 675
_RS26165
COO64_RS26170: COO64_RS26170 - LemA family protein, at 675 to 1,277
_RS26170
COO64_RS26175: bglX - beta-glucosidase BglX, at 1,460 to 3,751
bglX
COO64_RS26180: COO64_RS26180 - ATP-binding protein, at 3,812 to 5,569
_RS26180
Position (kb) 1
2
3
4 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 0.630 kb on + strand at 0.631 kb on - strand at 0.751 kb on + strand, within COO64_RS26170 at 0.751 kb on + strand, within COO64_RS26170 at 0.752 kb on - strand, within COO64_RS26170 at 0.752 kb on - strand, within COO64_RS26170 at 0.785 kb on + strand, within COO64_RS26170 at 0.802 kb on + strand, within COO64_RS26170 at 0.803 kb on - strand, within COO64_RS26170 at 0.803 kb on - strand, within COO64_RS26170 at 0.857 kb on + strand, within COO64_RS26170 at 1.051 kb on - strand, within COO64_RS26170 at 1.051 kb on - strand, within COO64_RS26170 at 1.087 kb on + strand, within COO64_RS26170 at 1.170 kb on + strand, within COO64_RS26170 at 1.170 kb on + strand, within COO64_RS26170 at 1.171 kb on - strand, within COO64_RS26170 at 1.183 kb on + strand, within COO64_RS26170 at 1.183 kb on + strand, within COO64_RS26170 at 1.183 kb on + strand, within COO64_RS26170 at 1.183 kb on + strand, within COO64_RS26170 at 1.184 kb on - strand, within COO64_RS26170 at 1.184 kb on - strand, within COO64_RS26170 at 1.251 kb on + strand at 1.252 kb on - strand at 1.261 kb on + strand at 1.261 kb on + strand at 1.261 kb on + strand at 1.261 kb on + strand at 1.262 kb on - strand at 1.262 kb on - strand at 1.262 kb on - strand at 1.283 kb on + strand at 1.284 kb on - strand at 1.284 kb on - strand at 1.284 kb on - strand at 1.323 kb on - strand at 1.323 kb on - strand at 1.323 kb on - strand at 1.363 kb on - strand at 1.382 kb on + strand at 1.391 kb on - strand at 1.419 kb on + strand at 1.420 kb on - strand at 1.420 kb on - strand at 1.439 kb on + strand at 1.439 kb on + strand at 1.440 kb on - strand at 1.440 kb on - strand at 1.440 kb on - strand at 1.440 kb on - strand at 1.440 kb on - strand at 1.514 kb on + strand at 1.514 kb on + strand at 1.515 kb on - strand at 1.522 kb on + strand at 1.675 kb on + strand at 1.676 kb on - strand at 1.684 kb on + strand at 1.772 kb on + strand, within bglX at 1.979 kb on + strand, within bglX at 1.979 kb on + strand, within bglX at 1.979 kb on + strand, within bglX at 1.979 kb on + strand, within bglX at 1.980 kb on - strand, within bglX at 1.980 kb on - strand, within bglX at 1.980 kb on - strand, within bglX at 1.980 kb on - strand, within bglX at 1.980 kb on - strand, within bglX at 1.980 kb on - strand, within bglX at 1.980 kb on - strand, within bglX at 2.082 kb on - strand, within bglX at 2.108 kb on + strand, within bglX at 2.108 kb on + strand, within bglX at 2.108 kb on + strand, within bglX at 2.108 kb on + strand, within bglX at 2.108 kb on + strand, within bglX at 2.150 kb on + strand, within bglX at 2.151 kb on - strand, within bglX at 2.414 kb on + strand, within bglX at 2.504 kb on + strand, within bglX at 2.504 kb on + strand, within bglX at 2.505 kb on - strand, within bglX at 2.505 kb on - strand, within bglX at 2.505 kb on - strand, within bglX at 2.573 kb on + strand, within bglX at 2.573 kb on + strand, within bglX at 2.573 kb on + strand, within bglX at 2.573 kb on + strand, within bglX at 2.574 kb on - strand, within bglX at 2.574 kb on - strand, within bglX at 2.816 kb on + strand, within bglX at 2.816 kb on + strand, within bglX at 2.816 kb on + strand, within bglX at 2.816 kb on + strand, within bglX at 2.817 kb on - strand, within bglX at 2.976 kb on + strand, within bglX at 3.218 kb on + strand, within bglX at 3.218 kb on + strand, within bglX at 3.218 kb on + strand, within bglX at 3.218 kb on + strand, within bglX at 3.218 kb on + strand, within bglX at 3.218 kb on + strand, within bglX at 3.219 kb on - strand, within bglX at 3.219 kb on - strand, within bglX at 3.278 kb on + strand, within bglX at 3.278 kb on + strand, within bglX at 3.278 kb on + strand, within bglX at 3.278 kb on + strand, within bglX at 3.278 kb on + strand, within bglX at 3.278 kb on + strand, within bglX at 3.278 kb on + strand, within bglX at 3.278 kb on + strand, within bglX at 3.278 kb on + strand, within bglX at 3.279 kb on - strand, within bglX at 3.279 kb on - strand, within bglX at 3.279 kb on - strand, within bglX at 3.281 kb on + strand, within bglX at 3.281 kb on + strand, within bglX at 3.281 kb on + strand, within bglX at 3.281 kb on + strand, within bglX at 3.281 kb on + strand, within bglX at 3.281 kb on + strand, within bglX at 3.281 kb on + strand, within bglX at 3.281 kb on + strand, within bglX at 3.281 kb on + strand, within bglX at 3.281 kb on + strand, within bglX at 3.281 kb on + strand, within bglX at 3.281 kb on + strand, within bglX at 3.281 kb on + strand, within bglX at 3.282 kb on - strand, within bglX at 3.282 kb on - strand, within bglX at 3.282 kb on - strand, within bglX at 3.282 kb on - strand, within bglX at 3.282 kb on - strand, within bglX at 3.282 kb on - strand, within bglX at 3.282 kb on - strand, within bglX at 3.282 kb on - strand, within bglX at 3.282 kb on - strand, within bglX at 3.282 kb on - strand, within bglX at 3.282 kb on - strand, within bglX at 3.332 kb on + strand, within bglX at 3.332 kb on + strand, within bglX at 3.332 kb on + strand, within bglX at 3.332 kb on + strand, within bglX at 3.332 kb on + strand, within bglX at 3.333 kb on - strand, within bglX at 3.333 kb on - strand, within bglX at 3.333 kb on - strand, within bglX at 3.333 kb on - strand, within bglX at 3.333 kb on - strand, within bglX at 3.345 kb on - strand, within bglX at 3.345 kb on - strand, within bglX at 3.372 kb on - strand, within bglX at 3.372 kb on - strand, within bglX at 3.383 kb on + strand, within bglX at 3.395 kb on + strand, within bglX at 3.522 kb on - strand at 3.522 kb on - strand at 3.650 kb on + strand at 3.650 kb on + strand at 3.749 kb on + strand at 3.749 kb on + strand at 3.749 kb on + strand at 3.750 kb on - strand at 3.962 kb on + strand at 3.963 kb on - strand at 3.963 kb on - strand at 3.963 kb on - strand at 4.193 kb on + strand, within COO64_RS26180 at 4.193 kb on + strand, within COO64_RS26180 at 4.193 kb on + strand, within COO64_RS26180 at 4.193 kb on + strand, within COO64_RS26180 at 4.193 kb on + strand, within COO64_RS26180 at 4.193 kb on + strand, within COO64_RS26180 at 4.193 kb on + strand, within COO64_RS26180 at 4.193 kb on + strand, within COO64_RS26180 at 4.193 kb on + strand, within COO64_RS26180 at 4.193 kb on + strand, within COO64_RS26180 at 4.193 kb on + strand, within COO64_RS26180 at 4.193 kb on + strand, within COO64_RS26180 at 4.193 kb on + strand, within COO64_RS26180 at 4.193 kb on + strand, within COO64_RS26180 at 4.193 kb on + strand, within COO64_RS26180 at 4.193 kb on + strand, within COO64_RS26180 at 4.193 kb on + strand, within COO64_RS26180 at 4.193 kb on + strand, within COO64_RS26180 at 4.193 kb on + strand, within COO64_RS26180 at 4.193 kb on + strand, within COO64_RS26180 at 4.193 kb on + strand, within COO64_RS26180 at 4.193 kb on + strand, within COO64_RS26180 at 4.193 kb on + strand, within COO64_RS26180 at 4.193 kb on + strand, within COO64_RS26180 at 4.193 kb on + strand, within COO64_RS26180 at 4.193 kb on + strand, within COO64_RS26180 at 4.194 kb on - strand, within COO64_RS26180 at 4.194 kb on - strand, within COO64_RS26180 at 4.194 kb on - strand, within COO64_RS26180 at 4.194 kb on - strand, within COO64_RS26180 at 4.194 kb on - strand, within COO64_RS26180 at 4.194 kb on - strand, within COO64_RS26180 at 4.194 kb on - strand, within COO64_RS26180 at 4.194 kb on - strand, within COO64_RS26180 at 4.194 kb on - strand, within COO64_RS26180 at 4.194 kb on - strand, within COO64_RS26180 at 4.194 kb on - strand, within COO64_RS26180 at 4.194 kb on - strand, within COO64_RS26180 at 4.194 kb on - strand, within COO64_RS26180 at 4.208 kb on + strand, within COO64_RS26180 at 4.208 kb on + strand, within COO64_RS26180 at 4.208 kb on + strand, within COO64_RS26180 at 4.209 kb on - strand, within COO64_RS26180 at 4.209 kb on - strand, within COO64_RS26180 at 4.209 kb on - strand, within COO64_RS26180 at 4.209 kb on - strand, within COO64_RS26180 at 4.224 kb on - strand, within COO64_RS26180 at 4.262 kb on + strand, within COO64_RS26180 at 4.262 kb on + strand, within COO64_RS26180 at 4.263 kb on - strand, within COO64_RS26180 at 4.263 kb on - strand, within COO64_RS26180 at 4.296 kb on - strand, within COO64_RS26180 at 4.524 kb on - strand, within COO64_RS26180 at 4.558 kb on + strand, within COO64_RS26180 at 4.558 kb on + strand, within COO64_RS26180 at 4.558 kb on + strand, within COO64_RS26180 at 4.559 kb on - strand, within COO64_RS26180 at 4.559 kb on - strand, within COO64_RS26180 at 4.559 kb on - strand, within COO64_RS26180 at 4.625 kb on + strand, within COO64_RS26180 at 4.625 kb on + strand, within COO64_RS26180 at 4.625 kb on + strand, within COO64_RS26180 at 4.625 kb on + strand, within COO64_RS26180 at 4.626 kb on - strand, within COO64_RS26180 at 4.626 kb on - strand, within COO64_RS26180
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas DC3000 grown in LB; 0.1 X remove 630 + -0.8 631 - +0.2 751 + COO64_RS26170 0.13 +0.7 751 + COO64_RS26170 0.13 +0.1 752 - COO64_RS26170 0.13 -1.5 752 - COO64_RS26170 0.13 +0.5 785 + COO64_RS26170 0.18 +0.2 802 + COO64_RS26170 0.21 -1.3 803 - COO64_RS26170 0.21 -0.3 803 - COO64_RS26170 0.21 +0.6 857 + COO64_RS26170 0.30 -0.0 1,051 - COO64_RS26170 0.62 +0.0 1,051 - COO64_RS26170 0.62 -1.2 1,087 + COO64_RS26170 0.68 -0.7 1,170 + COO64_RS26170 0.82 -0.7 1,170 + COO64_RS26170 0.82 -0.3 1,171 - COO64_RS26170 0.82 +0.2 1,183 + COO64_RS26170 0.84 -1.2 1,183 + COO64_RS26170 0.84 +0.7 1,183 + COO64_RS26170 0.84 -0.1 1,183 + COO64_RS26170 0.84 -0.7 1,184 - COO64_RS26170 0.84 +0.3 1,184 - COO64_RS26170 0.84 +0.1 1,251 + +0.4 1,252 - -1.0 1,261 + +0.5 1,261 + +3.3 1,261 + -0.2 1,261 + -0.4 1,262 - +0.3 1,262 - +0.5 1,262 - +0.0 1,283 + -0.3 1,284 - -0.0 1,284 - -0.5 1,284 - +1.5 1,323 - +0.3 1,323 - +0.9 1,323 - +0.2 1,363 - -0.4 1,382 + +0.3 1,391 - +0.5 1,419 + -0.1 1,420 - +0.1 1,420 - -0.6 1,439 + +0.4 1,439 + +0.9 1,440 - -0.0 1,440 - +0.9 1,440 - +0.1 1,440 - +0.8 1,440 - +0.7 1,514 + +0.2 1,514 + +0.4 1,515 - +0.0 1,522 + +0.7 1,675 + +0.8 1,676 - +0.2 1,684 + +1.0 1,772 + bglX COO64_RS26175 0.14 +0.1 1,979 + bglX COO64_RS26175 0.23 +0.3 1,979 + bglX COO64_RS26175 0.23 -0.2 1,979 + bglX COO64_RS26175 0.23 +0.7 1,979 + bglX COO64_RS26175 0.23 +0.6 1,980 - bglX COO64_RS26175 0.23 +1.3 1,980 - bglX COO64_RS26175 0.23 +0.6 1,980 - bglX COO64_RS26175 0.23 +0.2 1,980 - bglX COO64_RS26175 0.23 -0.8 1,980 - bglX COO64_RS26175 0.23 +0.3 1,980 - bglX COO64_RS26175 0.23 +0.3 1,980 - bglX COO64_RS26175 0.23 +1.1 2,082 - bglX COO64_RS26175 0.27 +0.2 2,108 + bglX COO64_RS26175 0.28 +0.2 2,108 + bglX COO64_RS26175 0.28 +0.1 2,108 + bglX COO64_RS26175 0.28 +0.3 2,108 + bglX COO64_RS26175 0.28 -0.5 2,108 + bglX COO64_RS26175 0.28 +0.9 2,150 + bglX COO64_RS26175 0.30 -1.2 2,151 - bglX COO64_RS26175 0.30 +0.7 2,414 + bglX COO64_RS26175 0.42 -0.2 2,504 + bglX COO64_RS26175 0.46 +0.2 2,504 + bglX COO64_RS26175 0.46 +0.2 2,505 - bglX COO64_RS26175 0.46 +0.5 2,505 - bglX COO64_RS26175 0.46 -1.1 2,505 - bglX COO64_RS26175 0.46 +0.5 2,573 + bglX COO64_RS26175 0.49 -0.6 2,573 + bglX COO64_RS26175 0.49 +0.2 2,573 + bglX COO64_RS26175 0.49 +0.7 2,573 + bglX COO64_RS26175 0.49 -0.1 2,574 - bglX COO64_RS26175 0.49 +0.8 2,574 - bglX COO64_RS26175 0.49 -0.6 2,816 + bglX COO64_RS26175 0.59 +0.8 2,816 + bglX COO64_RS26175 0.59 -0.2 2,816 + bglX COO64_RS26175 0.59 +0.1 2,816 + bglX COO64_RS26175 0.59 -0.1 2,817 - bglX COO64_RS26175 0.59 +0.4 2,976 + bglX COO64_RS26175 0.66 -0.1 3,218 + bglX COO64_RS26175 0.77 -1.1 3,218 + bglX COO64_RS26175 0.77 +0.2 3,218 + bglX COO64_RS26175 0.77 +0.8 3,218 + bglX COO64_RS26175 0.77 +0.1 3,218 + bglX COO64_RS26175 0.77 +0.3 3,218 + bglX COO64_RS26175 0.77 +0.6 3,219 - bglX COO64_RS26175 0.77 +0.3 3,219 - bglX COO64_RS26175 0.77 -0.0 3,278 + bglX COO64_RS26175 0.79 +0.4 3,278 + bglX COO64_RS26175 0.79 +0.1 3,278 + bglX COO64_RS26175 0.79 +0.9 3,278 + bglX COO64_RS26175 0.79 -0.7 3,278 + bglX COO64_RS26175 0.79 -0.5 3,278 + bglX COO64_RS26175 0.79 -0.0 3,278 + bglX COO64_RS26175 0.79 +0.6 3,278 + bglX COO64_RS26175 0.79 +0.3 3,278 + bglX COO64_RS26175 0.79 -0.1 3,279 - bglX COO64_RS26175 0.79 +0.4 3,279 - bglX COO64_RS26175 0.79 -0.2 3,279 - bglX COO64_RS26175 0.79 +1.0 3,281 + bglX COO64_RS26175 0.79 -0.4 3,281 + bglX COO64_RS26175 0.79 -1.1 3,281 + bglX COO64_RS26175 0.79 +0.3 3,281 + bglX COO64_RS26175 0.79 +1.1 3,281 + bglX COO64_RS26175 0.79 -0.4 3,281 + bglX COO64_RS26175 0.79 +1.3 3,281 + bglX COO64_RS26175 0.79 +0.4 3,281 + bglX COO64_RS26175 0.79 -0.0 3,281 + bglX COO64_RS26175 0.79 -0.9 3,281 + bglX COO64_RS26175 0.79 +0.0 3,281 + bglX COO64_RS26175 0.79 +0.6 3,281 + bglX COO64_RS26175 0.79 -0.0 3,281 + bglX COO64_RS26175 0.79 -0.3 3,282 - bglX COO64_RS26175 0.79 -0.9 3,282 - bglX COO64_RS26175 0.79 -0.0 3,282 - bglX COO64_RS26175 0.79 +0.3 3,282 - bglX COO64_RS26175 0.79 -0.0 3,282 - bglX COO64_RS26175 0.79 -0.2 3,282 - bglX COO64_RS26175 0.79 -0.0 3,282 - bglX COO64_RS26175 0.79 +2.0 3,282 - bglX COO64_RS26175 0.79 +0.3 3,282 - bglX COO64_RS26175 0.79 +0.2 3,282 - bglX COO64_RS26175 0.79 +0.7 3,282 - bglX COO64_RS26175 0.79 +0.5 3,332 + bglX COO64_RS26175 0.82 +0.6 3,332 + bglX COO64_RS26175 0.82 +0.2 3,332 + bglX COO64_RS26175 0.82 +0.2 3,332 + bglX COO64_RS26175 0.82 -0.0 3,332 + bglX COO64_RS26175 0.82 -0.6 3,333 - bglX COO64_RS26175 0.82 +0.6 3,333 - bglX COO64_RS26175 0.82 +0.3 3,333 - bglX COO64_RS26175 0.82 +0.5 3,333 - bglX COO64_RS26175 0.82 +1.1 3,333 - bglX COO64_RS26175 0.82 +0.4 3,345 - bglX COO64_RS26175 0.82 +1.5 3,345 - bglX COO64_RS26175 0.82 +0.2 3,372 - bglX COO64_RS26175 0.83 -1.5 3,372 - bglX COO64_RS26175 0.83 -0.1 3,383 + bglX COO64_RS26175 0.84 +0.2 3,395 + bglX COO64_RS26175 0.84 -1.7 3,522 - +0.6 3,522 - +0.3 3,650 + +0.6 3,650 + +0.5 3,749 + -0.7 3,749 + -0.0 3,749 + +0.2 3,750 - +0.5 3,962 + -0.3 3,963 - +0.5 3,963 - -0.2 3,963 - +0.7 4,193 + COO64_RS26180 0.22 +1.0 4,193 + COO64_RS26180 0.22 +0.2 4,193 + COO64_RS26180 0.22 +0.7 4,193 + COO64_RS26180 0.22 +0.5 4,193 + COO64_RS26180 0.22 -0.5 4,193 + COO64_RS26180 0.22 -1.4 4,193 + COO64_RS26180 0.22 -0.2 4,193 + COO64_RS26180 0.22 +1.1 4,193 + COO64_RS26180 0.22 +0.4 4,193 + COO64_RS26180 0.22 -0.1 4,193 + COO64_RS26180 0.22 -1.0 4,193 + COO64_RS26180 0.22 +0.8 4,193 + COO64_RS26180 0.22 +0.1 4,193 + COO64_RS26180 0.22 +0.7 4,193 + COO64_RS26180 0.22 +1.5 4,193 + COO64_RS26180 0.22 +0.1 4,193 + COO64_RS26180 0.22 +0.2 4,193 + COO64_RS26180 0.22 +0.7 4,193 + COO64_RS26180 0.22 +1.1 4,193 + COO64_RS26180 0.22 -0.5 4,193 + COO64_RS26180 0.22 +0.6 4,193 + COO64_RS26180 0.22 -0.1 4,193 + COO64_RS26180 0.22 -0.8 4,193 + COO64_RS26180 0.22 -0.3 4,193 + COO64_RS26180 0.22 +0.5 4,193 + COO64_RS26180 0.22 -1.5 4,194 - COO64_RS26180 0.22 -0.4 4,194 - COO64_RS26180 0.22 -0.2 4,194 - COO64_RS26180 0.22 +0.1 4,194 - COO64_RS26180 0.22 -0.8 4,194 - COO64_RS26180 0.22 +0.5 4,194 - COO64_RS26180 0.22 +1.0 4,194 - COO64_RS26180 0.22 -0.4 4,194 - COO64_RS26180 0.22 +0.2 4,194 - COO64_RS26180 0.22 -0.2 4,194 - COO64_RS26180 0.22 +0.2 4,194 - COO64_RS26180 0.22 -0.3 4,194 - COO64_RS26180 0.22 -0.0 4,194 - COO64_RS26180 0.22 +0.5 4,208 + COO64_RS26180 0.23 -0.1 4,208 + COO64_RS26180 0.23 -0.0 4,208 + COO64_RS26180 0.23 -1.0 4,209 - COO64_RS26180 0.23 -0.4 4,209 - COO64_RS26180 0.23 +0.4 4,209 - COO64_RS26180 0.23 +0.1 4,209 - COO64_RS26180 0.23 +0.9 4,224 - COO64_RS26180 0.23 +2.0 4,262 + COO64_RS26180 0.26 -0.0 4,262 + COO64_RS26180 0.26 -0.2 4,263 - COO64_RS26180 0.26 -1.9 4,263 - COO64_RS26180 0.26 -2.3 4,296 - COO64_RS26180 0.28 +0.4 4,524 - COO64_RS26180 0.41 -0.3 4,558 + COO64_RS26180 0.42 +0.2 4,558 + COO64_RS26180 0.42 -0.5 4,558 + COO64_RS26180 0.42 +0.5 4,559 - COO64_RS26180 0.42 -0.2 4,559 - COO64_RS26180 0.42 -0.4 4,559 - COO64_RS26180 0.42 -0.3 4,625 + COO64_RS26180 0.46 -0.3 4,625 + COO64_RS26180 0.46 -0.1 4,625 + COO64_RS26180 0.46 +0.2 4,625 + COO64_RS26180 0.46 +2.0 4,626 - COO64_RS26180 0.46 +0.1 4,626 - COO64_RS26180 0.46 +0.3
Or see this region's nucleotide sequence