Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS11960

Experiment: Supernatant; Pseudomonas DC3000 grown in LB; 0.1 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS11955 and COO64_RS11960 are separated by 72 nucleotidesCOO64_RS11960 and COO64_RS11965 are separated by 2 nucleotides COO64_RS11955: COO64_RS11955 - Nudix family hydrolase, at 206,984 to 207,928 _RS11955 COO64_RS11960: COO64_RS11960 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 208,001 to 208,561 _RS11960 COO64_RS11965: COO64_RS11965 - ATP-binding protein, at 208,564 to 210,576 _RS11965 Position (kb) 208 209Strain fitness (log2 ratio) -2 -1 0 1 2at 207.001 kb on - strandat 207.034 kb on + strandat 207.377 kb on + strand, within COO64_RS11955at 207.378 kb on - strand, within COO64_RS11955at 207.378 kb on - strand, within COO64_RS11955at 207.459 kb on + strand, within COO64_RS11955at 207.459 kb on + strand, within COO64_RS11955at 207.459 kb on + strand, within COO64_RS11955at 207.460 kb on - strand, within COO64_RS11955at 207.460 kb on - strand, within COO64_RS11955at 207.460 kb on - strand, within COO64_RS11955at 207.482 kb on + strand, within COO64_RS11955at 207.482 kb on + strand, within COO64_RS11955at 207.482 kb on + strand, within COO64_RS11955at 207.482 kb on + strand, within COO64_RS11955at 207.482 kb on + strand, within COO64_RS11955at 207.482 kb on + strand, within COO64_RS11955at 207.482 kb on + strand, within COO64_RS11955at 207.482 kb on + strand, within COO64_RS11955at 207.482 kb on + strand, within COO64_RS11955at 207.482 kb on + strand, within COO64_RS11955at 207.482 kb on + strand, within COO64_RS11955at 207.482 kb on + strand, within COO64_RS11955at 207.482 kb on + strand, within COO64_RS11955at 207.483 kb on - strand, within COO64_RS11955at 207.483 kb on - strand, within COO64_RS11955at 207.483 kb on - strand, within COO64_RS11955at 207.483 kb on - strand, within COO64_RS11955at 207.483 kb on - strand, within COO64_RS11955at 207.483 kb on - strand, within COO64_RS11955at 207.483 kb on - strand, within COO64_RS11955at 207.483 kb on - strand, within COO64_RS11955at 207.483 kb on - strand, within COO64_RS11955at 207.483 kb on - strand, within COO64_RS11955at 207.490 kb on + strand, within COO64_RS11955at 207.490 kb on + strand, within COO64_RS11955at 207.490 kb on + strand, within COO64_RS11955at 207.490 kb on + strand, within COO64_RS11955at 207.491 kb on - strand, within COO64_RS11955at 207.491 kb on - strand, within COO64_RS11955at 207.491 kb on - strand, within COO64_RS11955at 207.491 kb on - strand, within COO64_RS11955at 207.495 kb on - strand, within COO64_RS11955at 207.626 kb on + strand, within COO64_RS11955at 207.682 kb on + strand, within COO64_RS11955at 207.682 kb on + strand, within COO64_RS11955at 207.830 kb on + strand, within COO64_RS11955at 207.830 kb on + strand, within COO64_RS11955at 207.830 kb on + strand, within COO64_RS11955at 207.831 kb on - strand, within COO64_RS11955at 207.954 kb on + strandat 207.954 kb on + strandat 207.955 kb on - strandat 207.955 kb on - strandat 207.971 kb on + strandat 207.971 kb on + strandat 207.971 kb on + strandat 207.971 kb on + strandat 207.972 kb on - strandat 207.972 kb on - strandat 207.972 kb on - strandat 207.972 kb on - strandat 208.101 kb on + strand, within COO64_RS11960at 208.101 kb on + strand, within COO64_RS11960at 208.101 kb on + strand, within COO64_RS11960at 208.101 kb on + strand, within COO64_RS11960at 208.101 kb on + strand, within COO64_RS11960at 208.101 kb on + strand, within COO64_RS11960at 208.101 kb on + strand, within COO64_RS11960at 208.101 kb on + strand, within COO64_RS11960at 208.101 kb on + strand, within COO64_RS11960at 208.101 kb on + strand, within COO64_RS11960at 208.101 kb on + strand, within COO64_RS11960at 208.101 kb on + strand, within COO64_RS11960at 208.101 kb on + strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.102 kb on - strand, within COO64_RS11960at 208.106 kb on + strand, within COO64_RS11960at 208.106 kb on + strand, within COO64_RS11960at 208.107 kb on - strand, within COO64_RS11960at 208.311 kb on + strand, within COO64_RS11960at 208.311 kb on + strand, within COO64_RS11960at 208.312 kb on - strand, within COO64_RS11960at 208.480 kb on + strand, within COO64_RS11960at 208.536 kb on + strandat 208.536 kb on + strandat 208.536 kb on + strandat 208.536 kb on + strandat 208.537 kb on - strandat 208.537 kb on - strandat 208.537 kb on - strandat 208.615 kb on - strandat 208.615 kb on - strandat 208.676 kb on + strandat 208.743 kb on + strandat 208.743 kb on + strandat 208.743 kb on + strandat 208.744 kb on - strandat 208.744 kb on - strandat 208.834 kb on - strand, within COO64_RS11965at 209.447 kb on + strand, within COO64_RS11965at 209.447 kb on + strand, within COO64_RS11965at 209.448 kb on - strand, within COO64_RS11965at 209.448 kb on - strand, within COO64_RS11965

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Pseudomonas DC3000 grown in LB; 0.1 X
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207,001 - +0.4
207,034 + -0.3
207,377 + COO64_RS11955 0.42 -0.8
207,378 - COO64_RS11955 0.42 +0.2
207,378 - COO64_RS11955 0.42 +0.7
207,459 + COO64_RS11955 0.50 +0.4
207,459 + COO64_RS11955 0.50 -0.2
207,459 + COO64_RS11955 0.50 -0.1
207,460 - COO64_RS11955 0.50 +0.8
207,460 - COO64_RS11955 0.50 +0.5
207,460 - COO64_RS11955 0.50 +1.2
207,482 + COO64_RS11955 0.53 -1.4
207,482 + COO64_RS11955 0.53 +0.5
207,482 + COO64_RS11955 0.53 -0.3
207,482 + COO64_RS11955 0.53 +0.1
207,482 + COO64_RS11955 0.53 -0.2
207,482 + COO64_RS11955 0.53 +0.3
207,482 + COO64_RS11955 0.53 +0.2
207,482 + COO64_RS11955 0.53 +0.7
207,482 + COO64_RS11955 0.53 +0.4
207,482 + COO64_RS11955 0.53 -0.9
207,482 + COO64_RS11955 0.53 +0.6
207,482 + COO64_RS11955 0.53 -1.7
207,482 + COO64_RS11955 0.53 +0.3
207,483 - COO64_RS11955 0.53 +0.5
207,483 - COO64_RS11955 0.53 +1.3
207,483 - COO64_RS11955 0.53 +0.3
207,483 - COO64_RS11955 0.53 -0.1
207,483 - COO64_RS11955 0.53 +0.5
207,483 - COO64_RS11955 0.53 -0.5
207,483 - COO64_RS11955 0.53 +0.3
207,483 - COO64_RS11955 0.53 -1.2
207,483 - COO64_RS11955 0.53 +0.6
207,483 - COO64_RS11955 0.53 +0.5
207,490 + COO64_RS11955 0.54 +1.4
207,490 + COO64_RS11955 0.54 -0.8
207,490 + COO64_RS11955 0.54 +0.1
207,490 + COO64_RS11955 0.54 +0.6
207,491 - COO64_RS11955 0.54 +0.3
207,491 - COO64_RS11955 0.54 -2.3
207,491 - COO64_RS11955 0.54 +0.0
207,491 - COO64_RS11955 0.54 +1.2
207,495 - COO64_RS11955 0.54 +0.6
207,626 + COO64_RS11955 0.68 -0.8
207,682 + COO64_RS11955 0.74 -0.3
207,682 + COO64_RS11955 0.74 +0.0
207,830 + COO64_RS11955 0.90 +0.8
207,830 + COO64_RS11955 0.90 -0.7
207,830 + COO64_RS11955 0.90 -0.5
207,831 - COO64_RS11955 0.90 -0.5
207,954 + +0.4
207,954 + +0.0
207,955 - -2.2
207,955 - +0.7
207,971 + +0.4
207,971 + -0.4
207,971 + +2.0
207,971 + +0.2
207,972 - -0.7
207,972 - -1.4
207,972 - -0.8
207,972 - -0.0
208,101 + COO64_RS11960 0.18 -0.5
208,101 + COO64_RS11960 0.18 +0.3
208,101 + COO64_RS11960 0.18 -0.6
208,101 + COO64_RS11960 0.18 -0.5
208,101 + COO64_RS11960 0.18 -0.7
208,101 + COO64_RS11960 0.18 -0.4
208,101 + COO64_RS11960 0.18 +1.0
208,101 + COO64_RS11960 0.18 -0.7
208,101 + COO64_RS11960 0.18 +0.1
208,101 + COO64_RS11960 0.18 -0.1
208,101 + COO64_RS11960 0.18 -0.9
208,101 + COO64_RS11960 0.18 -0.3
208,101 + COO64_RS11960 0.18 -0.1
208,102 - COO64_RS11960 0.18 -0.3
208,102 - COO64_RS11960 0.18 -0.1
208,102 - COO64_RS11960 0.18 +0.5
208,102 - COO64_RS11960 0.18 +0.2
208,102 - COO64_RS11960 0.18 +0.1
208,102 - COO64_RS11960 0.18 -1.8
208,102 - COO64_RS11960 0.18 +0.2
208,102 - COO64_RS11960 0.18 -0.6
208,102 - COO64_RS11960 0.18 +0.4
208,102 - COO64_RS11960 0.18 +0.7
208,102 - COO64_RS11960 0.18 -1.2
208,102 - COO64_RS11960 0.18 -0.1
208,102 - COO64_RS11960 0.18 -0.1
208,102 - COO64_RS11960 0.18 -0.7
208,102 - COO64_RS11960 0.18 +0.8
208,106 + COO64_RS11960 0.19 -0.2
208,106 + COO64_RS11960 0.19 -0.8
208,107 - COO64_RS11960 0.19 -0.3
208,311 + COO64_RS11960 0.55 +0.4
208,311 + COO64_RS11960 0.55 -0.4
208,312 - COO64_RS11960 0.55 +0.2
208,480 + COO64_RS11960 0.85 +0.4
208,536 + -0.7
208,536 + +0.2
208,536 + -0.5
208,536 + -0.4
208,537 - -1.5
208,537 - +0.3
208,537 - +0.7
208,615 - +1.3
208,615 - +0.6
208,676 + -1.2
208,743 + +0.4
208,743 + +0.4
208,743 + +0.0
208,744 - -0.1
208,744 - +0.2
208,834 - COO64_RS11965 0.13 +0.0
209,447 + COO64_RS11965 0.44 +2.0
209,447 + COO64_RS11965 0.44 -1.3
209,448 - COO64_RS11965 0.44 +0.0
209,448 - COO64_RS11965 0.44 +0.4

Or see this region's nucleotide sequence