Experiment: Glycogen from bovine liver 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04411 and BACOVA_04413 overlap by 27 nucleotides BACOVA_04413 and BACOVA_04412 overlap by 20 nucleotides BACOVA_04412 and BACOVA_04414 overlap by 4 nucleotides BACOVA_04414 and BACOVA_04415 are separated by 93 nucleotides
BACOVA_04411: BACOVA_04411 - phenylalanine--tRNA ligase, alpha subunit, at 326,824 to 327,843
_04411
BACOVA_04413: BACOVA_04413 - hypothetical protein, at 327,817 to 328,011
_04413
BACOVA_04412: BACOVA_04412 - transporter, major facilitator family protein, at 327,992 to 329,191
_04412
BACOVA_04414: BACOVA_04414 - endonuclease III, at 329,188 to 329,865
_04414
BACOVA_04415: BACOVA_04415 - phosphoglycerate kinase, at 329,959 to 331,218
_04415
Position (kb) 327
328
329
330 Strain fitness (log2 ratio) -2
-1
0
1
2 at 327.841 kb on + strand at 327.842 kb on - strand at 327.914 kb on + strand, within BACOVA_04413 at 327.914 kb on + strand, within BACOVA_04413 at 327.991 kb on + strand, within BACOVA_04413 at 328.012 kb on + strand at 328.022 kb on + strand at 328.055 kb on + strand at 328.224 kb on - strand, within BACOVA_04412 at 328.269 kb on + strand, within BACOVA_04412 at 328.290 kb on + strand, within BACOVA_04412 at 328.291 kb on - strand, within BACOVA_04412 at 328.294 kb on + strand, within BACOVA_04412 at 328.357 kb on - strand, within BACOVA_04412 at 328.359 kb on + strand, within BACOVA_04412 at 328.359 kb on + strand, within BACOVA_04412 at 328.359 kb on + strand, within BACOVA_04412 at 328.359 kb on + strand, within BACOVA_04412 at 328.359 kb on + strand, within BACOVA_04412 at 328.360 kb on - strand, within BACOVA_04412 at 328.369 kb on + strand, within BACOVA_04412 at 328.369 kb on + strand, within BACOVA_04412 at 328.370 kb on - strand, within BACOVA_04412 at 328.370 kb on - strand, within BACOVA_04412 at 328.370 kb on - strand, within BACOVA_04412 at 328.398 kb on + strand, within BACOVA_04412 at 328.403 kb on + strand, within BACOVA_04412 at 328.404 kb on - strand, within BACOVA_04412 at 328.415 kb on - strand, within BACOVA_04412 at 328.492 kb on - strand, within BACOVA_04412 at 328.499 kb on + strand, within BACOVA_04412 at 328.516 kb on + strand, within BACOVA_04412 at 328.517 kb on - strand, within BACOVA_04412 at 328.531 kb on - strand, within BACOVA_04412 at 328.674 kb on - strand, within BACOVA_04412 at 328.674 kb on - strand, within BACOVA_04412 at 328.806 kb on + strand, within BACOVA_04412 at 328.807 kb on - strand, within BACOVA_04412 at 328.809 kb on + strand, within BACOVA_04412 at 328.823 kb on + strand, within BACOVA_04412 at 328.823 kb on + strand, within BACOVA_04412 at 328.863 kb on + strand, within BACOVA_04412 at 328.865 kb on + strand, within BACOVA_04412 at 328.866 kb on - strand, within BACOVA_04412 at 328.866 kb on - strand, within BACOVA_04412 at 328.895 kb on - strand, within BACOVA_04412 at 328.920 kb on + strand, within BACOVA_04412 at 329.038 kb on - strand, within BACOVA_04412 at 329.071 kb on + strand, within BACOVA_04412 at 329.072 kb on - strand at 329.086 kb on + strand at 329.086 kb on + strand at 329.087 kb on - strand at 329.102 kb on + strand at 329.184 kb on + strand at 329.185 kb on - strand at 329.185 kb on - strand at 329.241 kb on - strand at 329.241 kb on - strand at 329.241 kb on - strand at 329.278 kb on + strand, within BACOVA_04414 at 329.355 kb on + strand, within BACOVA_04414 at 329.413 kb on + strand, within BACOVA_04414 at 329.414 kb on - strand, within BACOVA_04414 at 329.415 kb on + strand, within BACOVA_04414 at 329.415 kb on + strand, within BACOVA_04414 at 329.416 kb on - strand, within BACOVA_04414 at 329.417 kb on + strand, within BACOVA_04414 at 329.417 kb on + strand, within BACOVA_04414 at 329.432 kb on - strand, within BACOVA_04414 at 329.494 kb on - strand, within BACOVA_04414 at 329.600 kb on + strand, within BACOVA_04414 at 329.604 kb on + strand, within BACOVA_04414 at 329.604 kb on + strand, within BACOVA_04414 at 329.604 kb on + strand, within BACOVA_04414 at 329.604 kb on + strand, within BACOVA_04414 at 329.711 kb on + strand, within BACOVA_04414 at 329.749 kb on + strand, within BACOVA_04414 at 329.824 kb on + strand at 329.890 kb on + strand at 329.890 kb on + strand at 329.890 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycogen from bovine liver 2.5 mg/mL (C) remove 327,841 + -0.2 327,842 - -1.0 327,914 + BACOVA_04413 0.50 +0.4 327,914 + BACOVA_04413 0.50 +0.1 327,991 + BACOVA_04413 0.89 +1.2 328,012 + -0.5 328,022 + -1.6 328,055 + -2.0 328,224 - BACOVA_04412 0.19 -0.9 328,269 + BACOVA_04412 0.23 +2.1 328,290 + BACOVA_04412 0.25 -1.2 328,291 - BACOVA_04412 0.25 +0.6 328,294 + BACOVA_04412 0.25 -0.6 328,357 - BACOVA_04412 0.30 -0.4 328,359 + BACOVA_04412 0.31 +0.2 328,359 + BACOVA_04412 0.31 -1.3 328,359 + BACOVA_04412 0.31 -1.7 328,359 + BACOVA_04412 0.31 -0.7 328,359 + BACOVA_04412 0.31 -0.1 328,360 - BACOVA_04412 0.31 -1.6 328,369 + BACOVA_04412 0.31 -0.9 328,369 + BACOVA_04412 0.31 +0.7 328,370 - BACOVA_04412 0.32 +0.1 328,370 - BACOVA_04412 0.32 +0.6 328,370 - BACOVA_04412 0.32 -1.4 328,398 + BACOVA_04412 0.34 +0.2 328,403 + BACOVA_04412 0.34 -1.5 328,404 - BACOVA_04412 0.34 -1.9 328,415 - BACOVA_04412 0.35 -1.0 328,492 - BACOVA_04412 0.42 +0.5 328,499 + BACOVA_04412 0.42 +0.9 328,516 + BACOVA_04412 0.44 -2.2 328,517 - BACOVA_04412 0.44 +0.8 328,531 - BACOVA_04412 0.45 -1.7 328,674 - BACOVA_04412 0.57 +0.3 328,674 - BACOVA_04412 0.57 -1.1 328,806 + BACOVA_04412 0.68 -0.5 328,807 - BACOVA_04412 0.68 -0.3 328,809 + BACOVA_04412 0.68 -0.8 328,823 + BACOVA_04412 0.69 -1.2 328,823 + BACOVA_04412 0.69 +0.1 328,863 + BACOVA_04412 0.73 +0.3 328,865 + BACOVA_04412 0.73 -0.5 328,866 - BACOVA_04412 0.73 -0.4 328,866 - BACOVA_04412 0.73 -1.7 328,895 - BACOVA_04412 0.75 -0.3 328,920 + BACOVA_04412 0.77 +1.0 329,038 - BACOVA_04412 0.87 -1.6 329,071 + BACOVA_04412 0.90 -0.7 329,072 - -0.2 329,086 + +1.0 329,086 + +0.2 329,087 - -1.6 329,102 + -0.7 329,184 + +0.2 329,185 - +0.3 329,185 - -2.0 329,241 - +1.4 329,241 - +0.3 329,241 - +1.1 329,278 + BACOVA_04414 0.13 -0.7 329,355 + BACOVA_04414 0.25 +0.2 329,413 + BACOVA_04414 0.33 -0.1 329,414 - BACOVA_04414 0.33 +0.8 329,415 + BACOVA_04414 0.33 -1.0 329,415 + BACOVA_04414 0.33 +0.3 329,416 - BACOVA_04414 0.34 -2.3 329,417 + BACOVA_04414 0.34 -0.3 329,417 + BACOVA_04414 0.34 +0.2 329,432 - BACOVA_04414 0.36 +2.2 329,494 - BACOVA_04414 0.45 -0.7 329,600 + BACOVA_04414 0.61 -1.4 329,604 + BACOVA_04414 0.61 -0.2 329,604 + BACOVA_04414 0.61 +2.3 329,604 + BACOVA_04414 0.61 +0.1 329,604 + BACOVA_04414 0.61 +0.4 329,711 + BACOVA_04414 0.77 +0.6 329,749 + BACOVA_04414 0.83 +0.2 329,824 + +0.3 329,890 + +1.0 329,890 + -0.2 329,890 + -0.7
Or see this region's nucleotide sequence