Experiment: Glycogen from bovine liver 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03263 and BACOVA_03264 are separated by 34 nucleotides BACOVA_03264 and BACOVA_03265 overlap by 4 nucleotides
BACOVA_03263: BACOVA_03263 - hypothetical protein, at 357,556 to 359,175
_03263
BACOVA_03264: BACOVA_03264 - hypothetical protein, at 359,210 to 360,367
_03264
BACOVA_03265: BACOVA_03265 - TonB-dependent receptor, at 360,364 to 362,247
_03265
Position (kb) 359
360
361 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 358.257 kb on + strand, within BACOVA_03263 at 358.270 kb on - strand, within BACOVA_03263 at 358.270 kb on - strand, within BACOVA_03263 at 358.271 kb on + strand, within BACOVA_03263 at 358.318 kb on + strand, within BACOVA_03263 at 358.319 kb on - strand, within BACOVA_03263 at 358.319 kb on - strand, within BACOVA_03263 at 358.319 kb on - strand, within BACOVA_03263 at 358.366 kb on + strand, within BACOVA_03263 at 358.371 kb on + strand, within BACOVA_03263 at 358.431 kb on + strand, within BACOVA_03263 at 358.437 kb on + strand, within BACOVA_03263 at 358.472 kb on - strand, within BACOVA_03263 at 358.501 kb on - strand, within BACOVA_03263 at 358.508 kb on + strand, within BACOVA_03263 at 358.508 kb on + strand, within BACOVA_03263 at 358.509 kb on - strand, within BACOVA_03263 at 358.509 kb on - strand, within BACOVA_03263 at 358.525 kb on - strand, within BACOVA_03263 at 358.539 kb on + strand, within BACOVA_03263 at 358.540 kb on - strand, within BACOVA_03263 at 358.566 kb on + strand, within BACOVA_03263 at 358.569 kb on - strand, within BACOVA_03263 at 358.569 kb on - strand, within BACOVA_03263 at 358.618 kb on + strand, within BACOVA_03263 at 358.635 kb on + strand, within BACOVA_03263 at 358.635 kb on + strand, within BACOVA_03263 at 358.711 kb on - strand, within BACOVA_03263 at 358.731 kb on + strand, within BACOVA_03263 at 358.768 kb on - strand, within BACOVA_03263 at 358.779 kb on + strand, within BACOVA_03263 at 358.801 kb on - strand, within BACOVA_03263 at 358.824 kb on + strand, within BACOVA_03263 at 358.824 kb on + strand, within BACOVA_03263 at 358.828 kb on - strand, within BACOVA_03263 at 358.839 kb on + strand, within BACOVA_03263 at 358.899 kb on + strand, within BACOVA_03263 at 358.899 kb on + strand, within BACOVA_03263 at 358.900 kb on - strand, within BACOVA_03263 at 358.925 kb on - strand, within BACOVA_03263 at 358.955 kb on + strand, within BACOVA_03263 at 358.956 kb on - strand, within BACOVA_03263 at 358.987 kb on + strand, within BACOVA_03263 at 359.012 kb on - strand, within BACOVA_03263 at 359.024 kb on - strand at 359.134 kb on + strand at 359.135 kb on - strand at 359.135 kb on - strand at 359.162 kb on - strand at 359.226 kb on - strand at 359.233 kb on + strand at 359.248 kb on + strand at 359.311 kb on - strand at 359.311 kb on - strand at 359.312 kb on + strand at 359.312 kb on + strand at 359.331 kb on + strand, within BACOVA_03264 at 359.381 kb on + strand, within BACOVA_03264 at 359.461 kb on + strand, within BACOVA_03264 at 359.463 kb on + strand, within BACOVA_03264 at 359.463 kb on + strand, within BACOVA_03264 at 359.463 kb on + strand, within BACOVA_03264 at 359.464 kb on - strand, within BACOVA_03264 at 359.464 kb on - strand, within BACOVA_03264 at 359.519 kb on + strand, within BACOVA_03264 at 359.519 kb on + strand, within BACOVA_03264 at 359.519 kb on + strand, within BACOVA_03264 at 359.520 kb on - strand, within BACOVA_03264 at 359.520 kb on - strand, within BACOVA_03264 at 359.523 kb on + strand, within BACOVA_03264 at 359.524 kb on - strand, within BACOVA_03264 at 359.543 kb on - strand, within BACOVA_03264 at 359.570 kb on + strand, within BACOVA_03264 at 359.571 kb on - strand, within BACOVA_03264 at 359.583 kb on - strand, within BACOVA_03264 at 359.607 kb on - strand, within BACOVA_03264 at 359.622 kb on + strand, within BACOVA_03264 at 359.631 kb on + strand, within BACOVA_03264 at 359.635 kb on - strand, within BACOVA_03264 at 359.655 kb on + strand, within BACOVA_03264 at 359.655 kb on + strand, within BACOVA_03264 at 359.656 kb on - strand, within BACOVA_03264 at 359.659 kb on + strand, within BACOVA_03264 at 359.660 kb on - strand, within BACOVA_03264 at 359.687 kb on - strand, within BACOVA_03264 at 359.763 kb on + strand, within BACOVA_03264 at 359.764 kb on - strand, within BACOVA_03264 at 359.764 kb on - strand, within BACOVA_03264 at 359.772 kb on - strand, within BACOVA_03264 at 359.796 kb on - strand, within BACOVA_03264 at 359.891 kb on + strand, within BACOVA_03264 at 359.891 kb on + strand, within BACOVA_03264 at 359.891 kb on + strand, within BACOVA_03264 at 359.891 kb on + strand, within BACOVA_03264 at 359.892 kb on - strand, within BACOVA_03264 at 359.896 kb on - strand, within BACOVA_03264 at 359.949 kb on + strand, within BACOVA_03264 at 359.949 kb on + strand, within BACOVA_03264 at 359.949 kb on + strand, within BACOVA_03264 at 359.950 kb on - strand, within BACOVA_03264 at 359.950 kb on - strand, within BACOVA_03264 at 359.955 kb on + strand, within BACOVA_03264 at 359.955 kb on + strand, within BACOVA_03264 at 359.955 kb on + strand, within BACOVA_03264 at 359.955 kb on + strand, within BACOVA_03264 at 359.955 kb on + strand, within BACOVA_03264 at 359.955 kb on + strand, within BACOVA_03264 at 359.956 kb on - strand, within BACOVA_03264 at 359.956 kb on - strand, within BACOVA_03264 at 359.960 kb on - strand, within BACOVA_03264 at 359.974 kb on + strand, within BACOVA_03264 at 359.977 kb on - strand, within BACOVA_03264 at 359.986 kb on + strand, within BACOVA_03264 at 359.986 kb on + strand, within BACOVA_03264 at 360.023 kb on + strand, within BACOVA_03264 at 360.024 kb on - strand, within BACOVA_03264 at 360.067 kb on - strand, within BACOVA_03264 at 360.068 kb on + strand, within BACOVA_03264 at 360.069 kb on - strand, within BACOVA_03264 at 360.074 kb on - strand, within BACOVA_03264 at 360.082 kb on - strand, within BACOVA_03264 at 360.119 kb on + strand, within BACOVA_03264 at 360.120 kb on - strand, within BACOVA_03264 at 360.144 kb on + strand, within BACOVA_03264 at 360.145 kb on - strand, within BACOVA_03264 at 360.145 kb on - strand, within BACOVA_03264 at 360.149 kb on + strand, within BACOVA_03264 at 360.149 kb on - strand, within BACOVA_03264 at 360.149 kb on - strand, within BACOVA_03264 at 360.154 kb on + strand, within BACOVA_03264 at 360.159 kb on + strand, within BACOVA_03264 at 360.159 kb on + strand, within BACOVA_03264 at 360.159 kb on + strand, within BACOVA_03264 at 360.184 kb on - strand, within BACOVA_03264 at 360.292 kb on + strand at 360.323 kb on + strand at 360.341 kb on - strand at 360.360 kb on - strand at 360.413 kb on + strand at 360.424 kb on + strand at 360.425 kb on - strand at 360.450 kb on + strand at 360.472 kb on + strand at 360.473 kb on - strand at 360.522 kb on + strand at 360.539 kb on + strand at 360.569 kb on + strand, within BACOVA_03265 at 360.595 kb on - strand, within BACOVA_03265 at 360.596 kb on + strand, within BACOVA_03265 at 360.655 kb on + strand, within BACOVA_03265 at 360.655 kb on + strand, within BACOVA_03265 at 360.657 kb on + strand, within BACOVA_03265 at 360.657 kb on + strand, within BACOVA_03265 at 360.657 kb on + strand, within BACOVA_03265 at 360.657 kb on + strand, within BACOVA_03265 at 360.657 kb on + strand, within BACOVA_03265 at 360.658 kb on - strand, within BACOVA_03265 at 360.658 kb on - strand, within BACOVA_03265 at 360.659 kb on + strand, within BACOVA_03265 at 360.660 kb on - strand, within BACOVA_03265 at 360.691 kb on - strand, within BACOVA_03265 at 360.725 kb on + strand, within BACOVA_03265 at 360.775 kb on + strand, within BACOVA_03265 at 360.776 kb on - strand, within BACOVA_03265 at 360.871 kb on + strand, within BACOVA_03265 at 360.872 kb on - strand, within BACOVA_03265 at 360.879 kb on + strand, within BACOVA_03265 at 360.881 kb on + strand, within BACOVA_03265 at 360.881 kb on + strand, within BACOVA_03265 at 360.882 kb on - strand, within BACOVA_03265 at 360.885 kb on - strand, within BACOVA_03265 at 360.885 kb on - strand, within BACOVA_03265 at 360.893 kb on - strand, within BACOVA_03265 at 360.893 kb on - strand, within BACOVA_03265 at 360.898 kb on + strand, within BACOVA_03265 at 360.948 kb on + strand, within BACOVA_03265 at 360.959 kb on + strand, within BACOVA_03265 at 360.969 kb on + strand, within BACOVA_03265 at 360.969 kb on + strand, within BACOVA_03265 at 360.970 kb on - strand, within BACOVA_03265 at 360.970 kb on - strand, within BACOVA_03265 at 360.982 kb on + strand, within BACOVA_03265 at 360.982 kb on + strand, within BACOVA_03265 at 360.999 kb on + strand, within BACOVA_03265 at 361.047 kb on + strand, within BACOVA_03265 at 361.047 kb on + strand, within BACOVA_03265 at 361.048 kb on - strand, within BACOVA_03265 at 361.099 kb on + strand, within BACOVA_03265 at 361.149 kb on + strand, within BACOVA_03265 at 361.155 kb on + strand, within BACOVA_03265 at 361.156 kb on - strand, within BACOVA_03265 at 361.156 kb on - strand, within BACOVA_03265 at 361.156 kb on - strand, within BACOVA_03265 at 361.156 kb on - strand, within BACOVA_03265 at 361.156 kb on - strand, within BACOVA_03265 at 361.175 kb on + strand, within BACOVA_03265 at 361.176 kb on - strand, within BACOVA_03265 at 361.176 kb on - strand, within BACOVA_03265 at 361.177 kb on + strand, within BACOVA_03265 at 361.177 kb on + strand, within BACOVA_03265 at 361.178 kb on - strand, within BACOVA_03265 at 361.242 kb on + strand, within BACOVA_03265 at 361.243 kb on - strand, within BACOVA_03265 at 361.282 kb on + strand, within BACOVA_03265 at 361.317 kb on + strand, within BACOVA_03265 at 361.318 kb on - strand, within BACOVA_03265 at 361.318 kb on - strand, within BACOVA_03265 at 361.331 kb on + strand, within BACOVA_03265 at 361.331 kb on + strand, within BACOVA_03265 at 361.343 kb on - strand, within BACOVA_03265 at 361.364 kb on - strand, within BACOVA_03265
Per-strain Table
Position Strand Gene LocusTag Fraction Glycogen from bovine liver 2.5 mg/mL (C) remove 358,257 + BACOVA_03263 0.43 -0.6 358,270 - BACOVA_03263 0.44 +0.4 358,270 - BACOVA_03263 0.44 -0.1 358,271 + BACOVA_03263 0.44 +0.1 358,318 + BACOVA_03263 0.47 -1.3 358,319 - BACOVA_03263 0.47 -1.2 358,319 - BACOVA_03263 0.47 +0.2 358,319 - BACOVA_03263 0.47 +0.0 358,366 + BACOVA_03263 0.50 -2.0 358,371 + BACOVA_03263 0.50 -0.2 358,431 + BACOVA_03263 0.54 -0.2 358,437 + BACOVA_03263 0.54 -0.8 358,472 - BACOVA_03263 0.57 -0.8 358,501 - BACOVA_03263 0.58 +0.4 358,508 + BACOVA_03263 0.59 +0.7 358,508 + BACOVA_03263 0.59 -1.5 358,509 - BACOVA_03263 0.59 -1.2 358,509 - BACOVA_03263 0.59 -1.0 358,525 - BACOVA_03263 0.60 +0.6 358,539 + BACOVA_03263 0.61 +0.6 358,540 - BACOVA_03263 0.61 +0.2 358,566 + BACOVA_03263 0.62 -4.1 358,569 - BACOVA_03263 0.63 -0.3 358,569 - BACOVA_03263 0.63 -0.2 358,618 + BACOVA_03263 0.66 +0.1 358,635 + BACOVA_03263 0.67 -0.3 358,635 + BACOVA_03263 0.67 -0.1 358,711 - BACOVA_03263 0.71 +0.0 358,731 + BACOVA_03263 0.73 -0.6 358,768 - BACOVA_03263 0.75 +0.2 358,779 + BACOVA_03263 0.75 -0.4 358,801 - BACOVA_03263 0.77 +0.3 358,824 + BACOVA_03263 0.78 -0.9 358,824 + BACOVA_03263 0.78 -0.6 358,828 - BACOVA_03263 0.79 -0.3 358,839 + BACOVA_03263 0.79 -1.9 358,899 + BACOVA_03263 0.83 -1.4 358,899 + BACOVA_03263 0.83 -1.5 358,900 - BACOVA_03263 0.83 -1.5 358,925 - BACOVA_03263 0.85 -1.1 358,955 + BACOVA_03263 0.86 -0.5 358,956 - BACOVA_03263 0.86 -2.0 358,987 + BACOVA_03263 0.88 -1.2 359,012 - BACOVA_03263 0.90 +0.1 359,024 - -0.8 359,134 + +0.4 359,135 - -0.6 359,135 - +0.1 359,162 - -0.2 359,226 - +0.2 359,233 + -0.5 359,248 + -1.0 359,311 - -1.9 359,311 - -0.2 359,312 + -1.0 359,312 + -1.1 359,331 + BACOVA_03264 0.10 -0.4 359,381 + BACOVA_03264 0.15 +0.6 359,461 + BACOVA_03264 0.22 -1.1 359,463 + BACOVA_03264 0.22 -2.0 359,463 + BACOVA_03264 0.22 -2.3 359,463 + BACOVA_03264 0.22 -1.2 359,464 - BACOVA_03264 0.22 -2.3 359,464 - BACOVA_03264 0.22 +0.4 359,519 + BACOVA_03264 0.27 -1.0 359,519 + BACOVA_03264 0.27 -1.5 359,519 + BACOVA_03264 0.27 -0.6 359,520 - BACOVA_03264 0.27 +0.0 359,520 - BACOVA_03264 0.27 -1.5 359,523 + BACOVA_03264 0.27 -0.3 359,524 - BACOVA_03264 0.27 +0.2 359,543 - BACOVA_03264 0.29 -1.3 359,570 + BACOVA_03264 0.31 -0.6 359,571 - BACOVA_03264 0.31 -0.2 359,583 - BACOVA_03264 0.32 -1.5 359,607 - BACOVA_03264 0.34 +1.3 359,622 + BACOVA_03264 0.36 +0.4 359,631 + BACOVA_03264 0.36 +0.0 359,635 - BACOVA_03264 0.37 -1.4 359,655 + BACOVA_03264 0.38 -1.1 359,655 + BACOVA_03264 0.38 -1.2 359,656 - BACOVA_03264 0.39 -1.3 359,659 + BACOVA_03264 0.39 -0.2 359,660 - BACOVA_03264 0.39 +1.0 359,687 - BACOVA_03264 0.41 -3.2 359,763 + BACOVA_03264 0.48 -0.4 359,764 - BACOVA_03264 0.48 -0.8 359,764 - BACOVA_03264 0.48 -2.0 359,772 - BACOVA_03264 0.49 -2.2 359,796 - BACOVA_03264 0.51 -0.7 359,891 + BACOVA_03264 0.59 -0.0 359,891 + BACOVA_03264 0.59 -0.1 359,891 + BACOVA_03264 0.59 -0.8 359,891 + BACOVA_03264 0.59 -0.6 359,892 - BACOVA_03264 0.59 +0.5 359,896 - BACOVA_03264 0.59 +0.2 359,949 + BACOVA_03264 0.64 -0.9 359,949 + BACOVA_03264 0.64 -0.1 359,949 + BACOVA_03264 0.64 -1.8 359,950 - BACOVA_03264 0.64 -0.4 359,950 - BACOVA_03264 0.64 -0.9 359,955 + BACOVA_03264 0.64 -0.5 359,955 + BACOVA_03264 0.64 -1.1 359,955 + BACOVA_03264 0.64 +0.1 359,955 + BACOVA_03264 0.64 -0.4 359,955 + BACOVA_03264 0.64 +1.5 359,955 + BACOVA_03264 0.64 -1.0 359,956 - BACOVA_03264 0.64 -1.3 359,956 - BACOVA_03264 0.64 -1.5 359,960 - BACOVA_03264 0.65 -0.4 359,974 + BACOVA_03264 0.66 -0.6 359,977 - BACOVA_03264 0.66 -2.1 359,986 + BACOVA_03264 0.67 -2.0 359,986 + BACOVA_03264 0.67 -0.5 360,023 + BACOVA_03264 0.70 -1.5 360,024 - BACOVA_03264 0.70 -0.4 360,067 - BACOVA_03264 0.74 -2.0 360,068 + BACOVA_03264 0.74 -0.3 360,069 - BACOVA_03264 0.74 +0.8 360,074 - BACOVA_03264 0.75 -0.6 360,082 - BACOVA_03264 0.75 -0.2 360,119 + BACOVA_03264 0.78 -1.2 360,120 - BACOVA_03264 0.79 +0.5 360,144 + BACOVA_03264 0.81 -1.2 360,145 - BACOVA_03264 0.81 -2.2 360,145 - BACOVA_03264 0.81 -0.9 360,149 + BACOVA_03264 0.81 -0.1 360,149 - BACOVA_03264 0.81 -0.5 360,149 - BACOVA_03264 0.81 -0.2 360,154 + BACOVA_03264 0.82 +0.0 360,159 + BACOVA_03264 0.82 -0.2 360,159 + BACOVA_03264 0.82 -2.5 360,159 + BACOVA_03264 0.82 -1.5 360,184 - BACOVA_03264 0.84 +0.3 360,292 + -1.5 360,323 + -0.1 360,341 - -2.0 360,360 - -1.8 360,413 + -0.1 360,424 + +0.7 360,425 - -2.2 360,450 + -2.0 360,472 + -1.4 360,473 - -0.6 360,522 + -0.7 360,539 + -1.8 360,569 + BACOVA_03265 0.11 -0.9 360,595 - BACOVA_03265 0.12 -1.2 360,596 + BACOVA_03265 0.12 +0.8 360,655 + BACOVA_03265 0.15 -2.5 360,655 + BACOVA_03265 0.15 -0.6 360,657 + BACOVA_03265 0.16 +0.9 360,657 + BACOVA_03265 0.16 -0.6 360,657 + BACOVA_03265 0.16 -1.3 360,657 + BACOVA_03265 0.16 +0.5 360,657 + BACOVA_03265 0.16 -1.0 360,658 - BACOVA_03265 0.16 +1.2 360,658 - BACOVA_03265 0.16 +0.1 360,659 + BACOVA_03265 0.16 -3.2 360,660 - BACOVA_03265 0.16 +0.2 360,691 - BACOVA_03265 0.17 -1.3 360,725 + BACOVA_03265 0.19 -1.4 360,775 + BACOVA_03265 0.22 -0.4 360,776 - BACOVA_03265 0.22 -0.3 360,871 + BACOVA_03265 0.27 +0.3 360,872 - BACOVA_03265 0.27 -2.2 360,879 + BACOVA_03265 0.27 -0.8 360,881 + BACOVA_03265 0.27 -0.9 360,881 + BACOVA_03265 0.27 -0.5 360,882 - BACOVA_03265 0.27 +0.5 360,885 - BACOVA_03265 0.28 +1.8 360,885 - BACOVA_03265 0.28 -1.3 360,893 - BACOVA_03265 0.28 -0.3 360,893 - BACOVA_03265 0.28 -1.4 360,898 + BACOVA_03265 0.28 -1.4 360,948 + BACOVA_03265 0.31 -0.8 360,959 + BACOVA_03265 0.32 +0.7 360,969 + BACOVA_03265 0.32 -0.6 360,969 + BACOVA_03265 0.32 -0.9 360,970 - BACOVA_03265 0.32 +0.0 360,970 - BACOVA_03265 0.32 +1.1 360,982 + BACOVA_03265 0.33 -0.6 360,982 + BACOVA_03265 0.33 -0.6 360,999 + BACOVA_03265 0.34 -0.9 361,047 + BACOVA_03265 0.36 -1.1 361,047 + BACOVA_03265 0.36 -0.9 361,048 - BACOVA_03265 0.36 +0.3 361,099 + BACOVA_03265 0.39 +2.1 361,149 + BACOVA_03265 0.42 +0.2 361,155 + BACOVA_03265 0.42 -0.8 361,156 - BACOVA_03265 0.42 -0.4 361,156 - BACOVA_03265 0.42 -1.8 361,156 - BACOVA_03265 0.42 +0.5 361,156 - BACOVA_03265 0.42 +0.0 361,156 - BACOVA_03265 0.42 +0.8 361,175 + BACOVA_03265 0.43 -0.4 361,176 - BACOVA_03265 0.43 -1.3 361,176 - BACOVA_03265 0.43 -2.4 361,177 + BACOVA_03265 0.43 -0.6 361,177 + BACOVA_03265 0.43 -1.9 361,178 - BACOVA_03265 0.43 +0.1 361,242 + BACOVA_03265 0.47 -0.0 361,243 - BACOVA_03265 0.47 -0.8 361,282 + BACOVA_03265 0.49 -0.3 361,317 + BACOVA_03265 0.51 +0.2 361,318 - BACOVA_03265 0.51 +0.2 361,318 - BACOVA_03265 0.51 -0.2 361,331 + BACOVA_03265 0.51 -0.7 361,331 + BACOVA_03265 0.51 -0.0 361,343 - BACOVA_03265 0.52 +1.0 361,364 - BACOVA_03265 0.53 -2.1
Or see this region's nucleotide sequence