Experiment: Glycogen from bovine liver 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03059 and BACOVA_03060 are separated by 364 nucleotides BACOVA_03060 and BACOVA_03061 are separated by 14 nucleotides BACOVA_03061 and BACOVA_03062 are separated by 91 nucleotides
BACOVA_03059: BACOVA_03059 - VirE N-terminal domain protein, at 128,042 to 130,165
_03059
BACOVA_03060: BACOVA_03060 - transcriptional regulator, AraC family, at 130,530 to 131,402
_03060
BACOVA_03061: BACOVA_03061 - hypothetical protein, at 131,417 to 131,581
_03061
BACOVA_03062: BACOVA_03062 - SusD family protein, at 131,673 to 133,511
_03062
Position (kb) 130
131
132 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 129.567 kb on - strand, within BACOVA_03059 at 129.593 kb on - strand, within BACOVA_03059 at 129.593 kb on - strand, within BACOVA_03059 at 129.613 kb on + strand, within BACOVA_03059 at 129.614 kb on - strand, within BACOVA_03059 at 129.685 kb on + strand, within BACOVA_03059 at 129.688 kb on + strand, within BACOVA_03059 at 129.778 kb on + strand, within BACOVA_03059 at 129.803 kb on - strand, within BACOVA_03059 at 129.805 kb on + strand, within BACOVA_03059 at 129.809 kb on - strand, within BACOVA_03059 at 129.809 kb on - strand, within BACOVA_03059 at 129.809 kb on - strand, within BACOVA_03059 at 129.817 kb on + strand, within BACOVA_03059 at 129.827 kb on + strand, within BACOVA_03059 at 129.863 kb on + strand, within BACOVA_03059 at 129.907 kb on - strand, within BACOVA_03059 at 129.968 kb on + strand at 129.969 kb on - strand at 129.973 kb on + strand at 129.981 kb on + strand at 130.035 kb on + strand at 130.036 kb on - strand at 130.067 kb on - strand at 130.070 kb on - strand at 130.070 kb on - strand at 130.109 kb on - strand at 130.224 kb on - strand at 130.242 kb on - strand at 130.327 kb on + strand at 130.332 kb on + strand at 130.334 kb on + strand at 130.351 kb on + strand at 130.428 kb on - strand at 130.430 kb on - strand at 130.430 kb on - strand at 130.482 kb on - strand at 130.484 kb on + strand at 130.502 kb on + strand at 130.502 kb on + strand at 130.503 kb on - strand at 130.511 kb on + strand at 130.518 kb on - strand at 130.529 kb on + strand at 130.530 kb on - strand at 130.550 kb on - strand at 130.584 kb on + strand at 130.585 kb on - strand at 130.613 kb on + strand at 130.613 kb on + strand at 130.614 kb on - strand at 130.614 kb on - strand at 130.615 kb on + strand at 130.615 kb on + strand at 130.616 kb on - strand at 130.629 kb on - strand, within BACOVA_03060 at 130.695 kb on - strand, within BACOVA_03060 at 130.719 kb on - strand, within BACOVA_03060 at 130.740 kb on + strand, within BACOVA_03060 at 130.740 kb on + strand, within BACOVA_03060 at 130.741 kb on - strand, within BACOVA_03060 at 130.742 kb on + strand, within BACOVA_03060 at 130.742 kb on + strand, within BACOVA_03060 at 130.743 kb on - strand, within BACOVA_03060 at 130.745 kb on + strand, within BACOVA_03060 at 130.746 kb on - strand, within BACOVA_03060 at 130.746 kb on - strand, within BACOVA_03060 at 130.748 kb on + strand, within BACOVA_03060 at 130.840 kb on - strand, within BACOVA_03060 at 130.857 kb on - strand, within BACOVA_03060 at 130.859 kb on - strand, within BACOVA_03060 at 130.859 kb on - strand, within BACOVA_03060 at 130.859 kb on - strand, within BACOVA_03060 at 130.859 kb on - strand, within BACOVA_03060 at 130.884 kb on - strand, within BACOVA_03060 at 130.970 kb on + strand, within BACOVA_03060 at 130.971 kb on - strand, within BACOVA_03060 at 130.979 kb on + strand, within BACOVA_03060 at 131.048 kb on + strand, within BACOVA_03060 at 131.049 kb on - strand, within BACOVA_03060 at 131.109 kb on - strand, within BACOVA_03060 at 131.202 kb on - strand, within BACOVA_03060 at 131.202 kb on - strand, within BACOVA_03060 at 131.215 kb on + strand, within BACOVA_03060 at 131.337 kb on + strand at 131.405 kb on - strand at 131.422 kb on + strand at 131.425 kb on + strand at 131.434 kb on + strand, within BACOVA_03061 at 131.434 kb on + strand, within BACOVA_03061 at 131.434 kb on + strand, within BACOVA_03061 at 131.445 kb on + strand, within BACOVA_03061 at 131.454 kb on + strand, within BACOVA_03061 at 131.455 kb on - strand, within BACOVA_03061 at 131.469 kb on + strand, within BACOVA_03061 at 131.501 kb on + strand, within BACOVA_03061 at 131.503 kb on + strand, within BACOVA_03061 at 131.504 kb on - strand, within BACOVA_03061 at 131.507 kb on + strand, within BACOVA_03061 at 131.509 kb on + strand, within BACOVA_03061 at 131.510 kb on - strand, within BACOVA_03061 at 131.562 kb on + strand, within BACOVA_03061 at 131.569 kb on + strand at 131.575 kb on + strand at 131.576 kb on - strand at 131.579 kb on + strand at 131.579 kb on + strand at 131.579 kb on + strand at 131.588 kb on + strand at 131.588 kb on + strand at 131.609 kb on + strand at 131.612 kb on + strand at 131.613 kb on - strand at 131.614 kb on + strand at 131.617 kb on + strand at 131.618 kb on - strand at 131.622 kb on + strand at 131.623 kb on - strand at 131.654 kb on + strand at 131.655 kb on - strand at 131.655 kb on - strand at 131.674 kb on + strand at 131.675 kb on - strand at 131.675 kb on - strand at 131.720 kb on + strand at 131.727 kb on - strand at 131.742 kb on + strand at 131.743 kb on - strand at 131.743 kb on - strand at 131.743 kb on - strand at 131.749 kb on + strand at 131.772 kb on + strand at 131.849 kb on - strand at 131.881 kb on - strand, within BACOVA_03062 at 131.881 kb on - strand, within BACOVA_03062 at 131.897 kb on + strand, within BACOVA_03062 at 131.897 kb on + strand, within BACOVA_03062 at 131.897 kb on + strand, within BACOVA_03062 at 131.909 kb on + strand, within BACOVA_03062 at 131.910 kb on - strand, within BACOVA_03062 at 131.910 kb on - strand, within BACOVA_03062 at 131.948 kb on + strand, within BACOVA_03062 at 131.948 kb on + strand, within BACOVA_03062 at 131.948 kb on + strand, within BACOVA_03062 at 131.949 kb on - strand, within BACOVA_03062 at 132.007 kb on + strand, within BACOVA_03062 at 132.008 kb on - strand, within BACOVA_03062 at 132.030 kb on - strand, within BACOVA_03062 at 132.076 kb on - strand, within BACOVA_03062 at 132.076 kb on - strand, within BACOVA_03062 at 132.080 kb on - strand, within BACOVA_03062 at 132.083 kb on - strand, within BACOVA_03062 at 132.083 kb on - strand, within BACOVA_03062 at 132.095 kb on + strand, within BACOVA_03062 at 132.102 kb on - strand, within BACOVA_03062 at 132.115 kb on + strand, within BACOVA_03062 at 132.118 kb on + strand, within BACOVA_03062 at 132.118 kb on + strand, within BACOVA_03062 at 132.119 kb on - strand, within BACOVA_03062 at 132.119 kb on - strand, within BACOVA_03062 at 132.121 kb on + strand, within BACOVA_03062 at 132.157 kb on + strand, within BACOVA_03062 at 132.157 kb on + strand, within BACOVA_03062 at 132.157 kb on + strand, within BACOVA_03062 at 132.158 kb on - strand, within BACOVA_03062 at 132.177 kb on - strand, within BACOVA_03062 at 132.177 kb on - strand, within BACOVA_03062 at 132.178 kb on + strand, within BACOVA_03062 at 132.184 kb on + strand, within BACOVA_03062 at 132.184 kb on + strand, within BACOVA_03062 at 132.204 kb on - strand, within BACOVA_03062 at 132.212 kb on + strand, within BACOVA_03062 at 132.215 kb on + strand, within BACOVA_03062 at 132.215 kb on + strand, within BACOVA_03062 at 132.216 kb on - strand, within BACOVA_03062 at 132.216 kb on - strand, within BACOVA_03062 at 132.217 kb on + strand, within BACOVA_03062 at 132.218 kb on - strand, within BACOVA_03062 at 132.218 kb on - strand, within BACOVA_03062 at 132.219 kb on + strand, within BACOVA_03062 at 132.219 kb on + strand, within BACOVA_03062 at 132.303 kb on - strand, within BACOVA_03062 at 132.364 kb on + strand, within BACOVA_03062 at 132.365 kb on - strand, within BACOVA_03062 at 132.365 kb on - strand, within BACOVA_03062 at 132.365 kb on - strand, within BACOVA_03062 at 132.365 kb on - strand, within BACOVA_03062 at 132.365 kb on - strand, within BACOVA_03062 at 132.373 kb on - strand, within BACOVA_03062 at 132.394 kb on + strand, within BACOVA_03062
Per-strain Table
Position Strand Gene LocusTag Fraction Glycogen from bovine liver 2.5 mg/mL (C) remove 129,567 - BACOVA_03059 0.72 -1.4 129,593 - BACOVA_03059 0.73 +0.1 129,593 - BACOVA_03059 0.73 -0.5 129,613 + BACOVA_03059 0.74 -0.6 129,614 - BACOVA_03059 0.74 -0.5 129,685 + BACOVA_03059 0.77 -0.7 129,688 + BACOVA_03059 0.77 +0.4 129,778 + BACOVA_03059 0.82 -1.0 129,803 - BACOVA_03059 0.83 -1.2 129,805 + BACOVA_03059 0.83 -0.5 129,809 - BACOVA_03059 0.83 +0.4 129,809 - BACOVA_03059 0.83 -0.9 129,809 - BACOVA_03059 0.83 +3.0 129,817 + BACOVA_03059 0.84 +0.0 129,827 + BACOVA_03059 0.84 +0.1 129,863 + BACOVA_03059 0.86 -0.4 129,907 - BACOVA_03059 0.88 -0.5 129,968 + +1.2 129,969 - -0.5 129,973 + +0.4 129,981 + -0.5 130,035 + +0.0 130,036 - +1.0 130,067 - -0.6 130,070 - +0.7 130,070 - -1.2 130,109 - +0.8 130,224 - -0.6 130,242 - -0.1 130,327 + +0.3 130,332 + +0.3 130,334 + +0.5 130,351 + +0.1 130,428 - -0.3 130,430 - -0.3 130,430 - +0.2 130,482 - +0.5 130,484 + -0.9 130,502 + +0.1 130,502 + -0.1 130,503 - -0.4 130,511 + +0.4 130,518 - -1.0 130,529 + +0.1 130,530 - -0.2 130,550 - +0.4 130,584 + -2.5 130,585 - +0.7 130,613 + +1.2 130,613 + +0.4 130,614 - +0.4 130,614 - -0.2 130,615 + +0.5 130,615 + +0.1 130,616 - +0.0 130,629 - BACOVA_03060 0.11 +0.7 130,695 - BACOVA_03060 0.19 -0.7 130,719 - BACOVA_03060 0.22 +0.2 130,740 + BACOVA_03060 0.24 +0.3 130,740 + BACOVA_03060 0.24 -0.6 130,741 - BACOVA_03060 0.24 +0.8 130,742 + BACOVA_03060 0.24 +1.2 130,742 + BACOVA_03060 0.24 -0.4 130,743 - BACOVA_03060 0.24 -0.4 130,745 + BACOVA_03060 0.25 +0.0 130,746 - BACOVA_03060 0.25 -0.9 130,746 - BACOVA_03060 0.25 -2.2 130,748 + BACOVA_03060 0.25 +0.0 130,840 - BACOVA_03060 0.36 +0.1 130,857 - BACOVA_03060 0.37 +0.1 130,859 - BACOVA_03060 0.38 +0.3 130,859 - BACOVA_03060 0.38 +0.1 130,859 - BACOVA_03060 0.38 +0.0 130,859 - BACOVA_03060 0.38 -0.6 130,884 - BACOVA_03060 0.41 -1.2 130,970 + BACOVA_03060 0.50 +0.1 130,971 - BACOVA_03060 0.51 -0.9 130,979 + BACOVA_03060 0.51 -0.3 131,048 + BACOVA_03060 0.59 +2.0 131,049 - BACOVA_03060 0.59 +2.7 131,109 - BACOVA_03060 0.66 +0.3 131,202 - BACOVA_03060 0.77 -1.5 131,202 - BACOVA_03060 0.77 +1.2 131,215 + BACOVA_03060 0.78 +0.7 131,337 + +0.3 131,405 - +0.9 131,422 + -1.0 131,425 + +0.7 131,434 + BACOVA_03061 0.10 -0.4 131,434 + BACOVA_03061 0.10 -0.3 131,434 + BACOVA_03061 0.10 +0.3 131,445 + BACOVA_03061 0.17 -0.3 131,454 + BACOVA_03061 0.22 +1.2 131,455 - BACOVA_03061 0.23 +0.4 131,469 + BACOVA_03061 0.32 +1.0 131,501 + BACOVA_03061 0.51 -0.1 131,503 + BACOVA_03061 0.52 -0.9 131,504 - BACOVA_03061 0.53 +0.5 131,507 + BACOVA_03061 0.55 +0.8 131,509 + BACOVA_03061 0.56 -0.4 131,510 - BACOVA_03061 0.56 -0.1 131,562 + BACOVA_03061 0.88 +0.0 131,569 + -0.9 131,575 + +1.3 131,576 - -0.7 131,579 + -1.1 131,579 + -0.2 131,579 + +0.5 131,588 + -0.5 131,588 + -0.8 131,609 + +0.6 131,612 + +0.7 131,613 - +0.8 131,614 + +0.3 131,617 + -1.0 131,618 - -0.0 131,622 + -0.6 131,623 - +0.2 131,654 + -0.9 131,655 - +0.6 131,655 - +0.0 131,674 + -1.0 131,675 - +0.7 131,675 - +0.3 131,720 + -0.7 131,727 - -0.8 131,742 + +0.1 131,743 - -1.1 131,743 - -0.2 131,743 - +0.4 131,749 + +0.3 131,772 + +0.2 131,849 - -0.4 131,881 - BACOVA_03062 0.11 -0.5 131,881 - BACOVA_03062 0.11 -0.4 131,897 + BACOVA_03062 0.12 +0.9 131,897 + BACOVA_03062 0.12 -0.1 131,897 + BACOVA_03062 0.12 -0.7 131,909 + BACOVA_03062 0.13 +0.8 131,910 - BACOVA_03062 0.13 +0.2 131,910 - BACOVA_03062 0.13 -1.0 131,948 + BACOVA_03062 0.15 +0.7 131,948 + BACOVA_03062 0.15 -2.4 131,948 + BACOVA_03062 0.15 -0.6 131,949 - BACOVA_03062 0.15 -0.4 132,007 + BACOVA_03062 0.18 -0.1 132,008 - BACOVA_03062 0.18 -0.6 132,030 - BACOVA_03062 0.19 -0.2 132,076 - BACOVA_03062 0.22 +0.6 132,076 - BACOVA_03062 0.22 -0.8 132,080 - BACOVA_03062 0.22 -1.1 132,083 - BACOVA_03062 0.22 -0.9 132,083 - BACOVA_03062 0.22 -0.2 132,095 + BACOVA_03062 0.23 -0.8 132,102 - BACOVA_03062 0.23 -0.5 132,115 + BACOVA_03062 0.24 +0.2 132,118 + BACOVA_03062 0.24 +0.4 132,118 + BACOVA_03062 0.24 +0.3 132,119 - BACOVA_03062 0.24 -0.8 132,119 - BACOVA_03062 0.24 +0.1 132,121 + BACOVA_03062 0.24 +0.7 132,157 + BACOVA_03062 0.26 +0.5 132,157 + BACOVA_03062 0.26 -0.9 132,157 + BACOVA_03062 0.26 -0.1 132,158 - BACOVA_03062 0.26 +0.6 132,177 - BACOVA_03062 0.27 -0.5 132,177 - BACOVA_03062 0.27 +0.2 132,178 + BACOVA_03062 0.27 +0.4 132,184 + BACOVA_03062 0.28 -0.3 132,184 + BACOVA_03062 0.28 -0.0 132,204 - BACOVA_03062 0.29 +0.0 132,212 + BACOVA_03062 0.29 -1.1 132,215 + BACOVA_03062 0.29 +0.4 132,215 + BACOVA_03062 0.29 -2.2 132,216 - BACOVA_03062 0.30 -0.7 132,216 - BACOVA_03062 0.30 +0.1 132,217 + BACOVA_03062 0.30 -0.5 132,218 - BACOVA_03062 0.30 -1.1 132,218 - BACOVA_03062 0.30 -0.7 132,219 + BACOVA_03062 0.30 -1.6 132,219 + BACOVA_03062 0.30 +0.2 132,303 - BACOVA_03062 0.34 -0.7 132,364 + BACOVA_03062 0.38 +0.3 132,365 - BACOVA_03062 0.38 +0.1 132,365 - BACOVA_03062 0.38 -0.4 132,365 - BACOVA_03062 0.38 +0.5 132,365 - BACOVA_03062 0.38 +0.2 132,365 - BACOVA_03062 0.38 -0.0 132,373 - BACOVA_03062 0.38 -0.8 132,394 + BACOVA_03062 0.39 +0.9
Or see this region's nucleotide sequence