Experiment: Glycogen from bovine liver 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02803 and BACOVA_02804 are separated by 22 nucleotides BACOVA_02804 and BACOVA_02805 overlap by 4 nucleotides
BACOVA_02803: BACOVA_02803 - TonB-linked outer membrane protein, SusC/RagA family, at 264,862 to 267,945
_02803
BACOVA_02804: BACOVA_02804 - SusD family protein, at 267,968 to 269,878
_02804
BACOVA_02805: BACOVA_02805 - TonB-linked outer membrane protein, SusC/RagA family, at 269,875 to 272,988
_02805
Position (kb) 267
268
269
270 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 267.010 kb on + strand, within BACOVA_02803 at 267.011 kb on - strand, within BACOVA_02803 at 267.062 kb on + strand, within BACOVA_02803 at 267.062 kb on + strand, within BACOVA_02803 at 267.065 kb on + strand, within BACOVA_02803 at 267.066 kb on - strand, within BACOVA_02803 at 267.108 kb on + strand, within BACOVA_02803 at 267.109 kb on - strand, within BACOVA_02803 at 267.109 kb on - strand, within BACOVA_02803 at 267.113 kb on + strand, within BACOVA_02803 at 267.114 kb on - strand, within BACOVA_02803 at 267.120 kb on - strand, within BACOVA_02803 at 267.142 kb on - strand, within BACOVA_02803 at 267.142 kb on - strand, within BACOVA_02803 at 267.182 kb on + strand, within BACOVA_02803 at 267.182 kb on + strand, within BACOVA_02803 at 267.214 kb on - strand, within BACOVA_02803 at 267.352 kb on - strand, within BACOVA_02803 at 267.352 kb on - strand, within BACOVA_02803 at 267.357 kb on + strand, within BACOVA_02803 at 267.358 kb on - strand, within BACOVA_02803 at 267.391 kb on + strand, within BACOVA_02803 at 267.392 kb on - strand, within BACOVA_02803 at 267.405 kb on + strand, within BACOVA_02803 at 267.405 kb on + strand, within BACOVA_02803 at 267.405 kb on + strand, within BACOVA_02803 at 267.405 kb on + strand, within BACOVA_02803 at 267.405 kb on + strand, within BACOVA_02803 at 267.406 kb on - strand, within BACOVA_02803 at 267.454 kb on - strand, within BACOVA_02803 at 267.466 kb on - strand, within BACOVA_02803 at 267.468 kb on + strand, within BACOVA_02803 at 267.468 kb on + strand, within BACOVA_02803 at 267.469 kb on - strand, within BACOVA_02803 at 267.514 kb on + strand, within BACOVA_02803 at 267.530 kb on - strand, within BACOVA_02803 at 267.543 kb on + strand, within BACOVA_02803 at 267.543 kb on + strand, within BACOVA_02803 at 267.544 kb on - strand, within BACOVA_02803 at 267.544 kb on - strand, within BACOVA_02803 at 267.545 kb on + strand, within BACOVA_02803 at 267.545 kb on + strand, within BACOVA_02803 at 267.545 kb on + strand, within BACOVA_02803 at 267.546 kb on - strand, within BACOVA_02803 at 267.651 kb on + strand at 267.651 kb on + strand at 267.652 kb on - strand at 267.653 kb on + strand at 267.653 kb on + strand at 267.660 kb on + strand at 267.738 kb on + strand at 267.738 kb on + strand at 267.738 kb on + strand at 267.739 kb on - strand at 267.739 kb on - strand at 267.739 kb on - strand at 267.739 kb on - strand at 267.740 kb on + strand at 267.742 kb on + strand at 267.742 kb on + strand at 267.793 kb on - strand at 267.820 kb on + strand at 267.894 kb on + strand at 267.904 kb on + strand at 267.904 kb on + strand at 267.914 kb on - strand at 267.922 kb on + strand at 267.922 kb on + strand at 267.923 kb on - strand at 267.924 kb on + strand at 267.925 kb on - strand at 267.926 kb on + strand at 267.926 kb on + strand at 267.930 kb on + strand at 267.931 kb on - strand at 267.948 kb on - strand at 267.962 kb on + strand at 267.995 kb on - strand at 268.039 kb on + strand at 268.086 kb on + strand at 268.087 kb on - strand at 268.106 kb on - strand at 268.108 kb on - strand at 268.108 kb on - strand at 268.146 kb on + strand at 268.232 kb on - strand, within BACOVA_02804 at 268.237 kb on - strand, within BACOVA_02804 at 268.285 kb on - strand, within BACOVA_02804 at 268.334 kb on + strand, within BACOVA_02804 at 268.335 kb on - strand, within BACOVA_02804 at 268.372 kb on + strand, within BACOVA_02804 at 268.414 kb on - strand, within BACOVA_02804 at 268.458 kb on + strand, within BACOVA_02804 at 268.478 kb on + strand, within BACOVA_02804 at 268.478 kb on + strand, within BACOVA_02804 at 268.479 kb on - strand, within BACOVA_02804 at 268.538 kb on - strand, within BACOVA_02804 at 268.538 kb on - strand, within BACOVA_02804 at 268.543 kb on + strand, within BACOVA_02804 at 268.543 kb on + strand, within BACOVA_02804 at 268.544 kb on - strand, within BACOVA_02804 at 268.544 kb on - strand, within BACOVA_02804 at 268.545 kb on + strand, within BACOVA_02804 at 268.570 kb on + strand, within BACOVA_02804 at 268.583 kb on - strand, within BACOVA_02804 at 268.602 kb on + strand, within BACOVA_02804 at 268.614 kb on + strand, within BACOVA_02804 at 268.615 kb on - strand, within BACOVA_02804 at 268.681 kb on + strand, within BACOVA_02804 at 268.682 kb on - strand, within BACOVA_02804 at 268.711 kb on - strand, within BACOVA_02804 at 268.721 kb on - strand, within BACOVA_02804 at 268.767 kb on + strand, within BACOVA_02804 at 268.794 kb on + strand, within BACOVA_02804 at 268.795 kb on - strand, within BACOVA_02804 at 268.798 kb on + strand, within BACOVA_02804 at 268.798 kb on + strand, within BACOVA_02804 at 268.798 kb on + strand, within BACOVA_02804 at 268.799 kb on - strand, within BACOVA_02804 at 268.799 kb on - strand, within BACOVA_02804 at 268.802 kb on + strand, within BACOVA_02804 at 268.826 kb on - strand, within BACOVA_02804 at 268.828 kb on - strand, within BACOVA_02804 at 268.834 kb on + strand, within BACOVA_02804 at 268.834 kb on + strand, within BACOVA_02804 at 268.853 kb on - strand, within BACOVA_02804 at 268.861 kb on - strand, within BACOVA_02804 at 268.861 kb on - strand, within BACOVA_02804 at 268.929 kb on - strand, within BACOVA_02804 at 268.967 kb on + strand, within BACOVA_02804 at 268.978 kb on + strand, within BACOVA_02804 at 268.978 kb on + strand, within BACOVA_02804 at 268.978 kb on + strand, within BACOVA_02804 at 268.978 kb on + strand, within BACOVA_02804 at 268.979 kb on - strand, within BACOVA_02804 at 268.984 kb on - strand, within BACOVA_02804 at 269.011 kb on - strand, within BACOVA_02804 at 269.011 kb on - strand, within BACOVA_02804 at 269.136 kb on + strand, within BACOVA_02804 at 269.136 kb on + strand, within BACOVA_02804 at 269.157 kb on - strand, within BACOVA_02804 at 269.171 kb on + strand, within BACOVA_02804 at 269.210 kb on + strand, within BACOVA_02804 at 269.210 kb on + strand, within BACOVA_02804 at 269.210 kb on + strand, within BACOVA_02804 at 269.211 kb on - strand, within BACOVA_02804 at 269.211 kb on - strand, within BACOVA_02804 at 269.211 kb on - strand, within BACOVA_02804 at 269.212 kb on + strand, within BACOVA_02804 at 269.220 kb on + strand, within BACOVA_02804 at 269.368 kb on - strand, within BACOVA_02804 at 269.438 kb on + strand, within BACOVA_02804 at 269.478 kb on + strand, within BACOVA_02804 at 269.478 kb on + strand, within BACOVA_02804 at 269.479 kb on - strand, within BACOVA_02804 at 269.491 kb on + strand, within BACOVA_02804 at 269.542 kb on + strand, within BACOVA_02804 at 269.542 kb on + strand, within BACOVA_02804 at 269.546 kb on - strand, within BACOVA_02804 at 269.564 kb on - strand, within BACOVA_02804 at 269.611 kb on - strand, within BACOVA_02804 at 269.636 kb on + strand, within BACOVA_02804 at 269.637 kb on - strand, within BACOVA_02804 at 269.637 kb on - strand, within BACOVA_02804 at 269.640 kb on + strand, within BACOVA_02804 at 269.641 kb on - strand, within BACOVA_02804 at 269.641 kb on - strand, within BACOVA_02804 at 269.641 kb on - strand, within BACOVA_02804 at 269.641 kb on - strand, within BACOVA_02804 at 269.644 kb on + strand, within BACOVA_02804 at 269.645 kb on - strand, within BACOVA_02804 at 269.671 kb on + strand, within BACOVA_02804 at 269.679 kb on - strand, within BACOVA_02804 at 269.684 kb on - strand, within BACOVA_02804 at 269.728 kb on + strand at 269.828 kb on + strand at 269.843 kb on - strand at 269.879 kb on - strand at 269.879 kb on - strand at 269.879 kb on - strand at 269.901 kb on + strand at 269.901 kb on + strand at 269.999 kb on + strand at 269.999 kb on + strand at 270.000 kb on - strand at 270.002 kb on - strand at 270.023 kb on - strand at 270.083 kb on + strand at 270.083 kb on + strand at 270.083 kb on + strand at 270.096 kb on + strand at 270.097 kb on - strand at 270.098 kb on + strand at 270.098 kb on + strand at 270.098 kb on + strand at 270.099 kb on - strand at 270.099 kb on - strand at 270.099 kb on - strand at 270.104 kb on + strand at 270.104 kb on + strand at 270.104 kb on + strand at 270.105 kb on - strand at 270.109 kb on - strand at 270.124 kb on + strand at 270.124 kb on - strand at 270.144 kb on + strand at 270.145 kb on - strand at 270.192 kb on + strand, within BACOVA_02805 at 270.222 kb on + strand, within BACOVA_02805 at 270.222 kb on + strand, within BACOVA_02805 at 270.245 kb on + strand, within BACOVA_02805 at 270.246 kb on - strand, within BACOVA_02805 at 270.246 kb on - strand, within BACOVA_02805 at 270.253 kb on + strand, within BACOVA_02805 at 270.254 kb on - strand, within BACOVA_02805 at 270.277 kb on - strand, within BACOVA_02805 at 270.294 kb on + strand, within BACOVA_02805 at 270.331 kb on - strand, within BACOVA_02805 at 270.486 kb on - strand, within BACOVA_02805 at 270.486 kb on - strand, within BACOVA_02805 at 270.486 kb on - strand, within BACOVA_02805 at 270.490 kb on - strand, within BACOVA_02805 at 270.525 kb on - strand, within BACOVA_02805 at 270.525 kb on - strand, within BACOVA_02805 at 270.699 kb on + strand, within BACOVA_02805 at 270.705 kb on + strand, within BACOVA_02805 at 270.759 kb on + strand, within BACOVA_02805 at 270.760 kb on - strand, within BACOVA_02805 at 270.762 kb on + strand, within BACOVA_02805 at 270.763 kb on - strand, within BACOVA_02805 at 270.781 kb on - strand, within BACOVA_02805 at 270.783 kb on + strand, within BACOVA_02805 at 270.783 kb on + strand, within BACOVA_02805 at 270.784 kb on - strand, within BACOVA_02805 at 270.810 kb on + strand, within BACOVA_02805 at 270.810 kb on + strand, within BACOVA_02805 at 270.833 kb on - strand, within BACOVA_02805 at 270.836 kb on - strand, within BACOVA_02805 at 270.858 kb on + strand, within BACOVA_02805 at 270.861 kb on + strand, within BACOVA_02805 at 270.862 kb on - strand, within BACOVA_02805
Per-strain Table
Position Strand Gene LocusTag Fraction Glycogen from bovine liver 2.5 mg/mL (C) remove 267,010 + BACOVA_02803 0.70 +1.1 267,011 - BACOVA_02803 0.70 +1.2 267,062 + BACOVA_02803 0.71 +0.5 267,062 + BACOVA_02803 0.71 +0.6 267,065 + BACOVA_02803 0.71 +0.2 267,066 - BACOVA_02803 0.71 -0.4 267,108 + BACOVA_02803 0.73 +0.6 267,109 - BACOVA_02803 0.73 +0.5 267,109 - BACOVA_02803 0.73 +0.2 267,113 + BACOVA_02803 0.73 +0.5 267,114 - BACOVA_02803 0.73 +1.0 267,120 - BACOVA_02803 0.73 +0.0 267,142 - BACOVA_02803 0.74 -0.4 267,142 - BACOVA_02803 0.74 +0.3 267,182 + BACOVA_02803 0.75 -0.3 267,182 + BACOVA_02803 0.75 +0.9 267,214 - BACOVA_02803 0.76 -0.3 267,352 - BACOVA_02803 0.81 +0.7 267,352 - BACOVA_02803 0.81 +0.0 267,357 + BACOVA_02803 0.81 -1.7 267,358 - BACOVA_02803 0.81 -0.4 267,391 + BACOVA_02803 0.82 +0.3 267,392 - BACOVA_02803 0.82 +0.4 267,405 + BACOVA_02803 0.82 -0.6 267,405 + BACOVA_02803 0.82 -0.4 267,405 + BACOVA_02803 0.82 +0.6 267,405 + BACOVA_02803 0.82 -1.9 267,405 + BACOVA_02803 0.82 +0.5 267,406 - BACOVA_02803 0.82 -0.4 267,454 - BACOVA_02803 0.84 -1.0 267,466 - BACOVA_02803 0.84 +0.5 267,468 + BACOVA_02803 0.85 -0.0 267,468 + BACOVA_02803 0.85 +1.0 267,469 - BACOVA_02803 0.85 +0.6 267,514 + BACOVA_02803 0.86 +1.6 267,530 - BACOVA_02803 0.87 +0.5 267,543 + BACOVA_02803 0.87 +0.3 267,543 + BACOVA_02803 0.87 -0.3 267,544 - BACOVA_02803 0.87 +1.3 267,544 - BACOVA_02803 0.87 -1.2 267,545 + BACOVA_02803 0.87 +0.6 267,545 + BACOVA_02803 0.87 -0.2 267,545 + BACOVA_02803 0.87 +0.4 267,546 - BACOVA_02803 0.87 -0.4 267,651 + -1.0 267,651 + +0.2 267,652 - +0.5 267,653 + +0.2 267,653 + +0.0 267,660 + -0.4 267,738 + +1.1 267,738 + -0.5 267,738 + -0.0 267,739 - +1.6 267,739 - +0.4 267,739 - +0.9 267,739 - +0.0 267,740 + +0.6 267,742 + +0.4 267,742 + +0.3 267,793 - -0.1 267,820 + +1.5 267,894 + -0.6 267,904 + +0.3 267,904 + -0.1 267,914 - -1.2 267,922 + +0.4 267,922 + -0.5 267,923 - +0.6 267,924 + +0.0 267,925 - -0.3 267,926 + -0.4 267,926 + +0.2 267,930 + +0.6 267,931 - +0.7 267,948 - +2.1 267,962 + -0.3 267,995 - +2.0 268,039 + +0.2 268,086 + +0.5 268,087 - +1.4 268,106 - -0.6 268,108 - -1.8 268,108 - +0.2 268,146 + +0.2 268,232 - BACOVA_02804 0.14 +0.5 268,237 - BACOVA_02804 0.14 +0.6 268,285 - BACOVA_02804 0.17 -0.1 268,334 + BACOVA_02804 0.19 -0.7 268,335 - BACOVA_02804 0.19 -0.6 268,372 + BACOVA_02804 0.21 +0.3 268,414 - BACOVA_02804 0.23 +0.7 268,458 + BACOVA_02804 0.26 +0.6 268,478 + BACOVA_02804 0.27 -0.5 268,478 + BACOVA_02804 0.27 -1.3 268,479 - BACOVA_02804 0.27 -0.8 268,538 - BACOVA_02804 0.30 -0.2 268,538 - BACOVA_02804 0.30 +0.2 268,543 + BACOVA_02804 0.30 +0.4 268,543 + BACOVA_02804 0.30 +0.1 268,544 - BACOVA_02804 0.30 -1.9 268,544 - BACOVA_02804 0.30 -0.3 268,545 + BACOVA_02804 0.30 +0.5 268,570 + BACOVA_02804 0.32 +0.1 268,583 - BACOVA_02804 0.32 -0.6 268,602 + BACOVA_02804 0.33 -1.1 268,614 + BACOVA_02804 0.34 -0.5 268,615 - BACOVA_02804 0.34 +0.3 268,681 + BACOVA_02804 0.37 -1.1 268,682 - BACOVA_02804 0.37 +0.6 268,711 - BACOVA_02804 0.39 -2.1 268,721 - BACOVA_02804 0.39 -0.6 268,767 + BACOVA_02804 0.42 +0.4 268,794 + BACOVA_02804 0.43 -0.9 268,795 - BACOVA_02804 0.43 -1.2 268,798 + BACOVA_02804 0.43 -1.3 268,798 + BACOVA_02804 0.43 +0.4 268,798 + BACOVA_02804 0.43 -1.6 268,799 - BACOVA_02804 0.43 -0.1 268,799 - BACOVA_02804 0.43 -1.1 268,802 + BACOVA_02804 0.44 -0.8 268,826 - BACOVA_02804 0.45 -0.1 268,828 - BACOVA_02804 0.45 +0.4 268,834 + BACOVA_02804 0.45 +0.3 268,834 + BACOVA_02804 0.45 +0.9 268,853 - BACOVA_02804 0.46 +0.6 268,861 - BACOVA_02804 0.47 +0.0 268,861 - BACOVA_02804 0.47 +0.9 268,929 - BACOVA_02804 0.50 -0.4 268,967 + BACOVA_02804 0.52 +0.4 268,978 + BACOVA_02804 0.53 -0.3 268,978 + BACOVA_02804 0.53 +0.3 268,978 + BACOVA_02804 0.53 +0.2 268,978 + BACOVA_02804 0.53 -0.4 268,979 - BACOVA_02804 0.53 -0.1 268,984 - BACOVA_02804 0.53 +0.8 269,011 - BACOVA_02804 0.55 +1.4 269,011 - BACOVA_02804 0.55 +2.1 269,136 + BACOVA_02804 0.61 +0.3 269,136 + BACOVA_02804 0.61 -2.9 269,157 - BACOVA_02804 0.62 -0.4 269,171 + BACOVA_02804 0.63 -0.4 269,210 + BACOVA_02804 0.65 +0.4 269,210 + BACOVA_02804 0.65 +0.7 269,210 + BACOVA_02804 0.65 -1.1 269,211 - BACOVA_02804 0.65 +0.6 269,211 - BACOVA_02804 0.65 +0.9 269,211 - BACOVA_02804 0.65 -0.8 269,212 + BACOVA_02804 0.65 -0.2 269,220 + BACOVA_02804 0.66 -1.6 269,368 - BACOVA_02804 0.73 -0.9 269,438 + BACOVA_02804 0.77 +0.2 269,478 + BACOVA_02804 0.79 +1.5 269,478 + BACOVA_02804 0.79 +0.2 269,479 - BACOVA_02804 0.79 +1.4 269,491 + BACOVA_02804 0.80 +0.7 269,542 + BACOVA_02804 0.82 +0.3 269,542 + BACOVA_02804 0.82 +0.8 269,546 - BACOVA_02804 0.83 -0.1 269,564 - BACOVA_02804 0.84 -0.5 269,611 - BACOVA_02804 0.86 -0.6 269,636 + BACOVA_02804 0.87 +1.0 269,637 - BACOVA_02804 0.87 +0.5 269,637 - BACOVA_02804 0.87 -1.2 269,640 + BACOVA_02804 0.87 -0.9 269,641 - BACOVA_02804 0.88 +0.0 269,641 - BACOVA_02804 0.88 -0.7 269,641 - BACOVA_02804 0.88 +0.1 269,641 - BACOVA_02804 0.88 -0.5 269,644 + BACOVA_02804 0.88 +0.0 269,645 - BACOVA_02804 0.88 -1.0 269,671 + BACOVA_02804 0.89 -1.4 269,679 - BACOVA_02804 0.90 +1.2 269,684 - BACOVA_02804 0.90 -1.8 269,728 + -0.6 269,828 + -0.5 269,843 - +0.5 269,879 - -1.1 269,879 - -0.7 269,879 - -0.1 269,901 + -0.8 269,901 + -0.3 269,999 + -0.3 269,999 + -0.4 270,000 - +1.0 270,002 - -0.2 270,023 - -0.6 270,083 + +0.7 270,083 + -0.3 270,083 + -1.4 270,096 + +0.3 270,097 - -0.1 270,098 + +0.6 270,098 + +0.9 270,098 + +0.6 270,099 - +0.5 270,099 - +0.2 270,099 - -0.7 270,104 + +0.5 270,104 + -0.3 270,104 + +0.5 270,105 - -0.4 270,109 - +0.2 270,124 + -0.1 270,124 - -0.9 270,144 + -0.6 270,145 - -0.7 270,192 + BACOVA_02805 0.10 -0.1 270,222 + BACOVA_02805 0.11 +0.7 270,222 + BACOVA_02805 0.11 -0.0 270,245 + BACOVA_02805 0.12 +0.9 270,246 - BACOVA_02805 0.12 -0.6 270,246 - BACOVA_02805 0.12 -0.5 270,253 + BACOVA_02805 0.12 -0.6 270,254 - BACOVA_02805 0.12 +1.3 270,277 - BACOVA_02805 0.13 +0.2 270,294 + BACOVA_02805 0.13 +0.5 270,331 - BACOVA_02805 0.15 +0.1 270,486 - BACOVA_02805 0.20 +0.3 270,486 - BACOVA_02805 0.20 -0.6 270,486 - BACOVA_02805 0.20 +0.6 270,490 - BACOVA_02805 0.20 -1.0 270,525 - BACOVA_02805 0.21 +0.7 270,525 - BACOVA_02805 0.21 -1.0 270,699 + BACOVA_02805 0.26 -1.2 270,705 + BACOVA_02805 0.27 +0.1 270,759 + BACOVA_02805 0.28 +0.3 270,760 - BACOVA_02805 0.28 -0.8 270,762 + BACOVA_02805 0.28 +0.7 270,763 - BACOVA_02805 0.29 +0.4 270,781 - BACOVA_02805 0.29 +0.4 270,783 + BACOVA_02805 0.29 -0.3 270,783 + BACOVA_02805 0.29 -1.0 270,784 - BACOVA_02805 0.29 -0.2 270,810 + BACOVA_02805 0.30 +0.9 270,810 + BACOVA_02805 0.30 +1.0 270,833 - BACOVA_02805 0.31 -1.1 270,836 - BACOVA_02805 0.31 -0.0 270,858 + BACOVA_02805 0.32 -0.5 270,861 + BACOVA_02805 0.32 +0.5 270,862 - BACOVA_02805 0.32 -0.6
Or see this region's nucleotide sequence