Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00276

Experiment: Glycogen from bovine liver 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_00274 and BACOVA_00275 are separated by 11 nucleotidesBACOVA_00275 and BACOVA_00276 are separated by 183 nucleotidesBACOVA_00276 and BACOVA_00277 are separated by 22 nucleotides BACOVA_00274: BACOVA_00274 - N-acylglucosamine 2-epimerase, at 528,734 to 529,930 _00274 BACOVA_00275: BACOVA_00275 - dihydrodipicolinate synthetase family, at 529,942 to 530,706 _00275 BACOVA_00276: BACOVA_00276 - hypothetical protein, at 530,890 to 532,443 _00276 BACOVA_00277: BACOVA_00277 - PKD domain protein, at 532,466 to 534,037 _00277 Position (kb) 530 531 532 533Strain fitness (log2 ratio) -2 -1 0 1 2at 529.892 kb on - strandat 529.894 kb on + strandat 529.895 kb on - strandat 529.908 kb on - strandat 529.908 kb on - strandat 529.908 kb on - strandat 529.909 kb on + strandat 529.910 kb on - strandat 529.911 kb on + strandat 529.912 kb on - strandat 529.912 kb on - strandat 529.930 kb on + strandat 529.930 kb on + strandat 530.091 kb on + strand, within BACOVA_00275at 530.191 kb on - strand, within BACOVA_00275at 530.191 kb on - strand, within BACOVA_00275at 530.212 kb on - strand, within BACOVA_00275at 530.295 kb on + strand, within BACOVA_00275at 530.295 kb on + strand, within BACOVA_00275at 530.315 kb on + strand, within BACOVA_00275at 530.316 kb on - strand, within BACOVA_00275at 530.355 kb on + strand, within BACOVA_00275at 530.355 kb on + strand, within BACOVA_00275at 530.356 kb on - strand, within BACOVA_00275at 530.358 kb on - strand, within BACOVA_00275at 530.382 kb on + strand, within BACOVA_00275at 530.419 kb on + strand, within BACOVA_00275at 530.457 kb on - strand, within BACOVA_00275at 530.515 kb on + strand, within BACOVA_00275at 530.630 kb on - strandat 530.634 kb on + strandat 530.634 kb on + strandat 530.685 kb on + strandat 530.706 kb on + strandat 530.706 kb on + strandat 530.706 kb on + strandat 530.708 kb on + strandat 530.708 kb on + strandat 530.709 kb on - strandat 530.709 kb on - strandat 530.758 kb on + strandat 530.764 kb on + strandat 530.774 kb on + strandat 530.793 kb on - strandat 530.862 kb on - strandat 530.887 kb on + strandat 530.891 kb on + strandat 530.891 kb on + strandat 530.920 kb on - strandat 530.923 kb on + strandat 530.923 kb on + strandat 530.924 kb on - strandat 531.127 kb on + strand, within BACOVA_00276at 531.127 kb on + strand, within BACOVA_00276at 531.214 kb on + strand, within BACOVA_00276at 531.263 kb on + strand, within BACOVA_00276at 531.264 kb on - strand, within BACOVA_00276at 531.360 kb on + strand, within BACOVA_00276at 531.383 kb on + strand, within BACOVA_00276at 531.427 kb on + strand, within BACOVA_00276at 531.427 kb on + strand, within BACOVA_00276at 531.428 kb on - strand, within BACOVA_00276at 531.607 kb on + strand, within BACOVA_00276at 531.607 kb on + strand, within BACOVA_00276at 531.608 kb on - strand, within BACOVA_00276at 531.608 kb on - strand, within BACOVA_00276at 531.609 kb on + strand, within BACOVA_00276at 531.609 kb on + strand, within BACOVA_00276at 531.609 kb on + strand, within BACOVA_00276at 531.643 kb on + strand, within BACOVA_00276at 531.644 kb on - strand, within BACOVA_00276at 531.739 kb on + strand, within BACOVA_00276at 531.740 kb on - strand, within BACOVA_00276at 531.744 kb on + strand, within BACOVA_00276at 531.804 kb on + strand, within BACOVA_00276at 531.807 kb on - strand, within BACOVA_00276at 531.840 kb on - strand, within BACOVA_00276at 531.840 kb on - strand, within BACOVA_00276at 531.864 kb on - strand, within BACOVA_00276at 532.051 kb on + strand, within BACOVA_00276at 532.056 kb on + strand, within BACOVA_00276at 532.056 kb on + strand, within BACOVA_00276at 532.130 kb on + strand, within BACOVA_00276at 532.130 kb on + strand, within BACOVA_00276at 532.150 kb on + strand, within BACOVA_00276at 532.206 kb on - strand, within BACOVA_00276at 532.301 kb on + strandat 532.302 kb on - strandat 532.318 kb on + strandat 532.368 kb on + strandat 532.369 kb on - strandat 532.434 kb on - strandat 532.443 kb on + strandat 532.463 kb on + strandat 532.527 kb on + strandat 532.549 kb on + strandat 532.550 kb on - strandat 532.550 kb on - strandat 532.550 kb on - strandat 532.553 kb on + strandat 532.553 kb on + strandat 532.593 kb on + strandat 532.595 kb on + strandat 532.595 kb on + strandat 532.596 kb on - strandat 532.596 kb on - strandat 532.596 kb on - strandat 532.636 kb on + strand, within BACOVA_00277at 532.686 kb on + strand, within BACOVA_00277at 532.718 kb on - strand, within BACOVA_00277at 532.720 kb on - strand, within BACOVA_00277at 532.769 kb on - strand, within BACOVA_00277at 532.773 kb on + strand, within BACOVA_00277at 532.784 kb on + strand, within BACOVA_00277at 532.785 kb on - strand, within BACOVA_00277at 532.917 kb on + strand, within BACOVA_00277at 532.917 kb on + strand, within BACOVA_00277at 532.953 kb on - strand, within BACOVA_00277at 533.038 kb on + strand, within BACOVA_00277at 533.038 kb on + strand, within BACOVA_00277at 533.091 kb on + strand, within BACOVA_00277at 533.100 kb on + strand, within BACOVA_00277at 533.107 kb on + strand, within BACOVA_00277at 533.171 kb on + strand, within BACOVA_00277at 533.172 kb on - strand, within BACOVA_00277at 533.177 kb on + strand, within BACOVA_00277at 533.216 kb on + strand, within BACOVA_00277at 533.217 kb on - strand, within BACOVA_00277at 533.217 kb on - strand, within BACOVA_00277at 533.252 kb on - strand, within BACOVA_00277at 533.255 kb on - strand, within BACOVA_00277at 533.287 kb on - strand, within BACOVA_00277at 533.287 kb on - strand, within BACOVA_00277at 533.323 kb on + strand, within BACOVA_00277at 533.326 kb on + strand, within BACOVA_00277at 533.406 kb on + strand, within BACOVA_00277at 533.406 kb on + strand, within BACOVA_00277at 533.407 kb on - strand, within BACOVA_00277at 533.407 kb on - strand, within BACOVA_00277at 533.407 kb on - strand, within BACOVA_00277at 533.442 kb on + strand, within BACOVA_00277

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycogen from bovine liver 2.5 mg/mL (C)
remove
529,892 - -0.9
529,894 + -0.4
529,895 - -1.8
529,908 - +0.6
529,908 - -0.3
529,908 - -0.4
529,909 + -0.6
529,910 - -0.6
529,911 + +0.5
529,912 - -0.1
529,912 - +0.6
529,930 + +0.7
529,930 + -0.7
530,091 + BACOVA_00275 0.19 +0.1
530,191 - BACOVA_00275 0.33 +0.6
530,191 - BACOVA_00275 0.33 +0.9
530,212 - BACOVA_00275 0.35 -0.0
530,295 + BACOVA_00275 0.46 -0.3
530,295 + BACOVA_00275 0.46 +0.1
530,315 + BACOVA_00275 0.49 +1.3
530,316 - BACOVA_00275 0.49 +0.6
530,355 + BACOVA_00275 0.54 -0.1
530,355 + BACOVA_00275 0.54 +0.5
530,356 - BACOVA_00275 0.54 -0.3
530,358 - BACOVA_00275 0.54 -0.4
530,382 + BACOVA_00275 0.58 +2.6
530,419 + BACOVA_00275 0.62 -0.3
530,457 - BACOVA_00275 0.67 +0.3
530,515 + BACOVA_00275 0.75 +0.9
530,630 - +0.7
530,634 + +0.0
530,634 + +0.6
530,685 + +0.3
530,706 + +1.1
530,706 + -2.7
530,706 + +1.9
530,708 + -1.0
530,708 + +0.4
530,709 - -1.3
530,709 - -0.1
530,758 + -1.1
530,764 + -1.1
530,774 + +0.2
530,793 - +0.1
530,862 - -1.1
530,887 + +1.6
530,891 + +0.6
530,891 + +0.7
530,920 - -0.1
530,923 + -0.4
530,923 + -0.8
530,924 - -1.9
531,127 + BACOVA_00276 0.15 +0.7
531,127 + BACOVA_00276 0.15 +1.9
531,214 + BACOVA_00276 0.21 +1.6
531,263 + BACOVA_00276 0.24 -1.6
531,264 - BACOVA_00276 0.24 -0.3
531,360 + BACOVA_00276 0.30 -0.5
531,383 + BACOVA_00276 0.32 -0.0
531,427 + BACOVA_00276 0.35 -0.2
531,427 + BACOVA_00276 0.35 -0.3
531,428 - BACOVA_00276 0.35 -1.3
531,607 + BACOVA_00276 0.46 -1.3
531,607 + BACOVA_00276 0.46 +0.9
531,608 - BACOVA_00276 0.46 -0.0
531,608 - BACOVA_00276 0.46 -1.1
531,609 + BACOVA_00276 0.46 -1.4
531,609 + BACOVA_00276 0.46 +1.6
531,609 + BACOVA_00276 0.46 +2.5
531,643 + BACOVA_00276 0.48 -1.1
531,644 - BACOVA_00276 0.49 -0.1
531,739 + BACOVA_00276 0.55 +0.4
531,740 - BACOVA_00276 0.55 -0.9
531,744 + BACOVA_00276 0.55 -1.1
531,804 + BACOVA_00276 0.59 +0.3
531,807 - BACOVA_00276 0.59 +1.2
531,840 - BACOVA_00276 0.61 -0.1
531,840 - BACOVA_00276 0.61 +0.0
531,864 - BACOVA_00276 0.63 -0.1
532,051 + BACOVA_00276 0.75 +0.2
532,056 + BACOVA_00276 0.75 +0.9
532,056 + BACOVA_00276 0.75 -0.9
532,130 + BACOVA_00276 0.80 +0.9
532,130 + BACOVA_00276 0.80 +0.9
532,150 + BACOVA_00276 0.81 +0.5
532,206 - BACOVA_00276 0.85 -0.2
532,301 + +0.3
532,302 - -0.7
532,318 + -0.7
532,368 + -1.9
532,369 - -0.5
532,434 - -0.9
532,443 + -0.4
532,463 + +2.5
532,527 + -1.0
532,549 + -0.7
532,550 - -2.7
532,550 - +1.9
532,550 - +0.7
532,553 + -0.2
532,553 + +0.3
532,593 + +0.3
532,595 + +0.8
532,595 + +0.1
532,596 - +0.3
532,596 - -0.4
532,596 - +0.6
532,636 + BACOVA_00277 0.11 -2.0
532,686 + BACOVA_00277 0.14 -1.4
532,718 - BACOVA_00277 0.16 -0.1
532,720 - BACOVA_00277 0.16 -0.5
532,769 - BACOVA_00277 0.19 +0.7
532,773 + BACOVA_00277 0.20 +0.4
532,784 + BACOVA_00277 0.20 -0.9
532,785 - BACOVA_00277 0.20 +0.9
532,917 + BACOVA_00277 0.29 -0.9
532,917 + BACOVA_00277 0.29 +0.1
532,953 - BACOVA_00277 0.31 -0.8
533,038 + BACOVA_00277 0.36 +0.5
533,038 + BACOVA_00277 0.36 -0.7
533,091 + BACOVA_00277 0.40 -0.1
533,100 + BACOVA_00277 0.40 -0.4
533,107 + BACOVA_00277 0.41 +0.1
533,171 + BACOVA_00277 0.45 -0.1
533,172 - BACOVA_00277 0.45 +0.2
533,177 + BACOVA_00277 0.45 -0.7
533,216 + BACOVA_00277 0.48 -0.1
533,217 - BACOVA_00277 0.48 -0.0
533,217 - BACOVA_00277 0.48 +0.3
533,252 - BACOVA_00277 0.50 -0.1
533,255 - BACOVA_00277 0.50 +0.7
533,287 - BACOVA_00277 0.52 -0.1
533,287 - BACOVA_00277 0.52 -0.6
533,323 + BACOVA_00277 0.55 -0.7
533,326 + BACOVA_00277 0.55 -0.3
533,406 + BACOVA_00277 0.60 -0.9
533,406 + BACOVA_00277 0.60 -0.7
533,407 - BACOVA_00277 0.60 -0.5
533,407 - BACOVA_00277 0.60 -1.3
533,407 - BACOVA_00277 0.60 -1.3
533,442 + BACOVA_00277 0.62 -0.2

Or see this region's nucleotide sequence