Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cotJC and gpA1 are separated by 119 nucleotides gpA1 and NIAGMN_28105 overlap by 1 nucleotides NIAGMN_28105 and lomR are separated by 64 nucleotides lomR and NIAGMN_28115 are separated by 66 nucleotides
NIAGMN_28090: cotJC - Mn-containing catalase, at 5,439,769 to 5,440,659
cotJC
NIAGMN_28095: gpA1 - phage tail protein, at 5,440,779 to 5,441,360
gpA1
NIAGMN_28105: NIAGMN_28105 - Prophage tail fibre N-terminal, at 5,441,360 to 5,444,275
_28105
NIAGMN_28110: lomR - Ail/Lom family protein, at 5,444,340 to 5,444,939
lomR
NIAGMN_28115: NIAGMN_28115 - phage portal protein, at 5,445,006 to 5,448,404
_28115
Position (kb) 5441
5442
5443
5444
5445 Strain fitness (log2 ratio) -1
0
1
2
3 at 5440.411 kb on + strand, within cotJC at 5440.650 kb on + strand at 5440.675 kb on + strand at 5440.909 kb on - strand, within gpA1 at 5440.932 kb on - strand, within gpA1 at 5440.932 kb on - strand, within gpA1 at 5441.361 kb on + strand at 5441.595 kb on - strand at 5441.651 kb on - strand at 5442.023 kb on - strand, within NIAGMN_28105 at 5442.089 kb on - strand, within NIAGMN_28105 at 5442.116 kb on - strand, within NIAGMN_28105 at 5442.135 kb on - strand, within NIAGMN_28105 at 5442.170 kb on - strand, within NIAGMN_28105 at 5442.191 kb on - strand, within NIAGMN_28105 at 5442.293 kb on + strand, within NIAGMN_28105 at 5442.667 kb on - strand, within NIAGMN_28105 at 5442.740 kb on + strand, within NIAGMN_28105 at 5442.869 kb on + strand, within NIAGMN_28105 at 5442.869 kb on + strand, within NIAGMN_28105 at 5443.432 kb on + strand, within NIAGMN_28105
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 5,440,411 + cotJC NIAGMN_28090 0.72 -1.0 5,440,650 + +0.6 5,440,675 + +0.0 5,440,909 - gpA1 NIAGMN_28095 0.22 -0.2 5,440,932 - gpA1 NIAGMN_28095 0.26 +0.8 5,440,932 - gpA1 NIAGMN_28095 0.26 +1.8 5,441,361 + +0.0 5,441,595 - +0.5 5,441,651 - +1.9 5,442,023 - NIAGMN_28105 0.23 -1.1 5,442,089 - NIAGMN_28105 0.25 +0.6 5,442,116 - NIAGMN_28105 0.26 +3.6 5,442,135 - NIAGMN_28105 0.27 -0.4 5,442,170 - NIAGMN_28105 0.28 +0.1 5,442,191 - NIAGMN_28105 0.28 -0.5 5,442,293 + NIAGMN_28105 0.32 -0.2 5,442,667 - NIAGMN_28105 0.45 -0.2 5,442,740 + NIAGMN_28105 0.47 +2.2 5,442,869 + NIAGMN_28105 0.52 -1.7 5,442,869 + NIAGMN_28105 0.52 +0.9 5,443,432 + NIAGMN_28105 0.71 -0.8
Or see this region's nucleotide sequence