Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hipB and ompT are separated by 498 nucleotides ompT and menH are separated by 186 nucleotides
NIAGMN_28035: hipB - transcriptional regulator, at 5,430,577 to 5,431,161
hipB
NIAGMN_28040: ompT - omptin family outer membrane protease OmpT, at 5,431,660 to 5,432,613
ompT
NIAGMN_28045: menH - alpha/beta hydrolase, at 5,432,800 to 5,434,284
menH
Position (kb) 5431
5432
5433 Strain fitness (log2 ratio) -1
0
1
2 at 5430.961 kb on - strand, within hipB at 5430.961 kb on - strand, within hipB at 5431.354 kb on + strand at 5431.388 kb on + strand at 5431.421 kb on + strand at 5431.624 kb on + strand at 5431.659 kb on + strand at 5431.754 kb on + strand at 5431.754 kb on + strand at 5431.754 kb on + strand at 5431.754 kb on + strand at 5431.875 kb on + strand, within ompT at 5431.888 kb on - strand, within ompT at 5431.910 kb on + strand, within ompT at 5431.910 kb on + strand, within ompT at 5431.910 kb on + strand, within ompT at 5431.959 kb on + strand, within ompT at 5432.095 kb on + strand, within ompT at 5432.161 kb on + strand, within ompT at 5432.161 kb on + strand, within ompT at 5432.162 kb on - strand, within ompT at 5432.163 kb on + strand, within ompT at 5432.167 kb on + strand, within ompT at 5432.257 kb on + strand, within ompT at 5432.313 kb on + strand, within ompT at 5432.380 kb on + strand, within ompT at 5432.410 kb on + strand, within ompT at 5432.461 kb on + strand, within ompT at 5432.572 kb on + strand at 5432.675 kb on + strand at 5432.717 kb on - strand at 5432.874 kb on - strand at 5432.889 kb on + strand at 5432.889 kb on + strand at 5433.430 kb on + strand, within menH
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 5,430,961 - hipB NIAGMN_28035 0.66 +0.0 5,430,961 - hipB NIAGMN_28035 0.66 +0.0 5,431,354 + -0.4 5,431,388 + +0.8 5,431,421 + -0.4 5,431,624 + -0.4 5,431,659 + -0.1 5,431,754 + -0.7 5,431,754 + +1.4 5,431,754 + +0.8 5,431,754 + -1.2 5,431,875 + ompT NIAGMN_28040 0.23 -0.1 5,431,888 - ompT NIAGMN_28040 0.24 +1.3 5,431,910 + ompT NIAGMN_28040 0.26 +0.0 5,431,910 + ompT NIAGMN_28040 0.26 +0.7 5,431,910 + ompT NIAGMN_28040 0.26 +0.6 5,431,959 + ompT NIAGMN_28040 0.31 -0.7 5,432,095 + ompT NIAGMN_28040 0.46 -0.2 5,432,161 + ompT NIAGMN_28040 0.53 +1.2 5,432,161 + ompT NIAGMN_28040 0.53 -1.2 5,432,162 - ompT NIAGMN_28040 0.53 -1.0 5,432,163 + ompT NIAGMN_28040 0.53 +0.4 5,432,167 + ompT NIAGMN_28040 0.53 -0.2 5,432,257 + ompT NIAGMN_28040 0.63 +2.6 5,432,313 + ompT NIAGMN_28040 0.68 +0.1 5,432,380 + ompT NIAGMN_28040 0.75 -0.7 5,432,410 + ompT NIAGMN_28040 0.79 -0.6 5,432,461 + ompT NIAGMN_28040 0.84 +2.5 5,432,572 + -0.5 5,432,675 + -0.4 5,432,717 - +1.7 5,432,874 - -1.7 5,432,889 + -0.2 5,432,889 + -0.2 5,433,430 + menH NIAGMN_28045 0.42 +0.0
Or see this region's nucleotide sequence