Strain Fitness in Escherichia coli ECRC102 around NIAGMN_27160

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_27155 and NIAGMN_27160 are separated by 290 nucleotides NIAGMN_27155: NIAGMN_27155 - exodeoxyribonuclease VIII, at 5,272,283 to 5,274,727 _27155 NIAGMN_27160: NIAGMN_27160 - integrase, at 5,275,018 to 5,276,148 _27160 Position (kb) 5275 5276 5277Strain fitness (log2 ratio) -2 -1 0 1at 5274.184 kb on - strand, within NIAGMN_27155at 5276.454 kb on + strandat 5276.795 kb on + strandat 5276.860 kb on - strandat 5276.894 kb on - strandat 5277.147 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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5,274,184 - NIAGMN_27155 0.78 +0.5
5,276,454 + -0.1
5,276,795 + +0.6
5,276,860 - +0.1
5,276,894 - -1.8
5,277,147 + +0.8

Or see this region's nucleotide sequence