Strain Fitness in Escherichia coli ECRC102 around NIAGMN_26730

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlapB and lapA are separated by 6 nucleotideslapA and pgpB are separated by 148 nucleotides NIAGMN_26725: lapB - lipopolysaccharide assembly protein LapB, at 5,204,077 to 5,205,246 lapB NIAGMN_26730: lapA - lipopolysaccharide assembly protein LapA, at 5,205,253 to 5,205,561 lapA NIAGMN_26735: pgpB - phosphatidylglycerophosphatase B, at 5,205,710 to 5,206,474 pgpB Position (kb) 5205 5206Strain fitness (log2 ratio) -1 0 1at 5205.616 kb on - strandat 5205.629 kb on - strandat 5206.309 kb on + strand, within pgpBat 5206.362 kb on - strand, within pgpB

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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5,205,616 - +0.6
5,205,629 - +0.6
5,206,309 + pgpB NIAGMN_26735 0.78 +0.9
5,206,362 - pgpB NIAGMN_26735 0.85 -1.0

Or see this region's nucleotide sequence