Strain Fitness in Escherichia coli ECRC102 around NIAGMN_26330

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntttcA and dbpA are separated by 128 nucleotidesdbpA and ynaL are separated by 32 nucleotidesynaL and zntB are separated by 274 nucleotides NIAGMN_26325: ttcA - tRNA 2-thiocytidine(32) synthetase TtcA, at 5,125,091 to 5,126,026 ttcA NIAGMN_26330: dbpA - ATP-dependent RNA helicase DbpA, at 5,126,155 to 5,127,528 dbpA NIAGMN_26335: ynaL - Protein YnaL, at 5,127,561 to 5,127,731 ynaL NIAGMN_26345: zntB - zinc transporter ZntB, at 5,128,006 to 5,128,989 zntB Position (kb) 5126 5127 5128Strain fitness (log2 ratio) -1 0 1at 5125.192 kb on + strand, within ttcAat 5125.249 kb on + strand, within ttcAat 5125.250 kb on - strand, within ttcAat 5125.491 kb on - strand, within ttcAat 5125.569 kb on + strand, within ttcAat 5125.600 kb on + strand, within ttcAat 5125.675 kb on + strand, within ttcAat 5126.326 kb on + strand, within dbpAat 5126.330 kb on - strand, within dbpAat 5126.551 kb on + strand, within dbpAat 5126.551 kb on + strand, within dbpAat 5126.607 kb on + strand, within dbpAat 5126.782 kb on - strand, within dbpAat 5126.822 kb on - strand, within dbpAat 5127.084 kb on + strand, within dbpAat 5127.458 kb on - strandat 5127.534 kb on - strandat 5127.731 kb on + strandat 5127.870 kb on - strandat 5127.870 kb on - strandat 5128.132 kb on + strand, within zntBat 5128.257 kb on + strand, within zntBat 5128.409 kb on - strand, within zntB

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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5,125,192 + ttcA NIAGMN_26325 0.11 +0.1
5,125,249 + ttcA NIAGMN_26325 0.17 -0.7
5,125,250 - ttcA NIAGMN_26325 0.17 +0.1
5,125,491 - ttcA NIAGMN_26325 0.43 -0.7
5,125,569 + ttcA NIAGMN_26325 0.51 -1.7
5,125,600 + ttcA NIAGMN_26325 0.54 -0.4
5,125,675 + ttcA NIAGMN_26325 0.62 -0.5
5,126,326 + dbpA NIAGMN_26330 0.12 +0.4
5,126,330 - dbpA NIAGMN_26330 0.13 +1.1
5,126,551 + dbpA NIAGMN_26330 0.29 +0.6
5,126,551 + dbpA NIAGMN_26330 0.29 -0.5
5,126,607 + dbpA NIAGMN_26330 0.33 -0.2
5,126,782 - dbpA NIAGMN_26330 0.46 -1.2
5,126,822 - dbpA NIAGMN_26330 0.49 +0.8
5,127,084 + dbpA NIAGMN_26330 0.68 -1.5
5,127,458 - -0.5
5,127,534 - -1.4
5,127,731 + -0.1
5,127,870 - +1.6
5,127,870 - +1.5
5,128,132 + zntB NIAGMN_26345 0.13 +0.9
5,128,257 + zntB NIAGMN_26345 0.26 +1.6
5,128,409 - zntB NIAGMN_26345 0.41 +0.2

Or see this region's nucleotide sequence