Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_26160 and terB overlap by 188 nucleotides terB and Arg_trna are separated by 169 nucleotides Arg_trna and Ile2_trna are separated by 100 nucleotides Ile2_trna and NIAGMN_26180 are separated by 139 nucleotides NIAGMN_26180 and NIAGMN_26185 overlap by 4 nucleotides NIAGMN_26185 and NIAGMN_26190 overlap by 1 nucleotides
NIAGMN_26160: NIAGMN_26160 - hypothetical protein, at 5,104,759 to 5,105,277
_26160
NIAGMN_26165: terB - tellurite resistance protein, at 5,105,090 to 5,105,521
terB
NIAGMN_26170: Arg_trna - tRNA-Arg(tct), at 5,105,691 to 5,105,767
_trna
NIAGMN_26175: Ile2_trna - tRNA-Ile2(cat), at 5,105,868 to 5,105,943
_trna
NIAGMN_26180: NIAGMN_26180 - antiterminator, at 5,106,083 to 5,106,637
_26180
NIAGMN_26185: NIAGMN_26185 - DUF1364 domain-containing protein, at 5,106,634 to 5,106,924
_26185
NIAGMN_26190: NIAGMN_26190 - DUF1367 domain-containing protein, at 5,106,924 to 5,107,523
_26190
Position (kb) 5105
5106 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5105.303 kb on - strand, within terB at 5105.360 kb on + strand, within terB at 5106.191 kb on + strand, within NIAGMN_26180 at 5106.242 kb on - strand, within NIAGMN_26180 at 5106.350 kb on - strand, within NIAGMN_26180 at 5106.505 kb on + strand, within NIAGMN_26180 at 5106.555 kb on - strand, within NIAGMN_26180
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 5,105,303 - terB NIAGMN_26165 0.49 -0.3 5,105,360 + terB NIAGMN_26165 0.62 +2.1 5,106,191 + NIAGMN_26180 0.19 +0.7 5,106,242 - NIAGMN_26180 0.29 +0.1 5,106,350 - NIAGMN_26180 0.48 +0.7 5,106,505 + NIAGMN_26180 0.76 -1.9 5,106,555 - NIAGMN_26180 0.85 +1.7
Or see this region's nucleotide sequence