Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25970

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntuspF and nleG5-1 are separated by 580 nucleotidesnleG5-1 and nleG6-1 are separated by 81 nucleotidesnleG6-1 and nleG2-2 are separated by 72 nucleotides NIAGMN_25965: uspF - universal stress protein UspF, at 5,072,759 to 5,073,193 uspF NIAGMN_25970: nleG5-1 - DUF1076 domain-containing protein, at 5,073,774 to 5,074,415 nleG5-1 NIAGMN_25975: nleG6-1 - DUF1076 domain-containing protein, at 5,074,497 to 5,075,126 nleG6-1 NIAGMN_25980: nleG2-2 - DUF1076 domain-containing protein, at 5,075,199 to 5,075,774 nleG2-2 Position (kb) 5073 5074 5075Strain fitness (log2 ratio) -2 -1 0 1at 5072.897 kb on + strand, within uspFat 5073.346 kb on - strandat 5073.588 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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5,072,897 + uspF NIAGMN_25965 0.32 -0.8
5,073,346 - -2.5
5,073,588 + +0.6

Or see this region's nucleotide sequence