Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tehA and ydcK are separated by 123 nucleotides ydcK and rimL are separated by 234 nucleotides rimL and ydcH are separated by 62 nucleotides ydcH and opgD are separated by 139 nucleotides
NIAGMN_25760: tehA - dicarboxylate transporter/tellurite-resistance protein TehA, at 5,026,827 to 5,027,819
tehA
NIAGMN_25765: ydcK - YdcK family protein, at 5,027,943 to 5,028,923
ydcK
NIAGMN_25770: rimL - 50S ribosomal protein L7/L12-serine acetyltransferase, at 5,029,158 to 5,029,454
rimL
NIAGMN_25775: ydcH - Uncharacterized protein YdcH, at 5,029,517 to 5,029,741
ydcH
NIAGMN_25780: opgD - glucan biosynthesis protein OpgD, at 5,029,881 to 5,031,500
opgD
Position (kb) 5027
5028
5029 Strain fitness (log2 ratio) -1
0
1
2 at 5027.028 kb on + strand, within tehA at 5027.060 kb on + strand, within tehA at 5027.078 kb on - strand, within tehA at 5027.921 kb on - strand at 5028.630 kb on + strand, within ydcK at 5028.669 kb on - strand, within ydcK at 5028.920 kb on - strand at 5029.519 kb on - strand at 5029.519 kb on - strand at 5029.782 kb on - strand at 5029.782 kb on - strand at 5029.907 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 5,027,028 + tehA NIAGMN_25760 0.20 -0.3 5,027,060 + tehA NIAGMN_25760 0.23 -1.0 5,027,078 - tehA NIAGMN_25760 0.25 -0.3 5,027,921 - +0.1 5,028,630 + ydcK NIAGMN_25765 0.70 -0.7 5,028,669 - ydcK NIAGMN_25765 0.74 -0.6 5,028,920 - +1.7 5,029,519 - -0.6 5,029,519 - -0.8 5,029,782 - -0.6 5,029,782 - +2.0 5,029,907 - -0.3
Or see this region's nucleotide sequence