Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25440

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdosP and dosP overlap by 4 nucleotidesdosP and ddpX are separated by 257 nucleotidesddpX and ddpA are separated by 13 nucleotides NIAGMN_25435: dosP - oxygen-sensing cyclic-di-GMP phosphodiesterase, at 4,958,936 to 4,960,177 dosP NIAGMN_25440: dosP - oxygen-sensing cyclic-di-GMP phosphodiesterase, at 4,960,174 to 4,961,325 dosP NIAGMN_25445: ddpX - D-alanyl-D-alanine dipeptidase, at 4,961,583 to 4,962,164 ddpX NIAGMN_25450: ddpA - putative D,D-dipeptide-binding periplasmic protein DdpA, at 4,962,178 to 4,963,728 ddpA Position (kb) 4960 4961 4962Strain fitness (log2 ratio) -1 0 1at 4960.899 kb on + strand, within dosPat 4961.493 kb on + strandat 4961.664 kb on - strand, within ddpX

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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4,960,899 + dosP NIAGMN_25440 0.63 -1.3
4,961,493 + -1.2
4,961,664 - ddpX NIAGMN_25445 0.14 +0.4

Or see this region's nucleotide sequence