Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25130

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnleG2-3 and nleG6-2 are separated by 72 nucleotidesnleG6-2 and nleG5-2 are separated by 81 nucleotidesnleG5-2 and NIAGMN_25135 are separated by 161 nucleotidesNIAGMN_25135 and ydfJ are separated by 59 nucleotides NIAGMN_25120: nleG2-3 - DUF1076 domain-containing protein, at 4,885,184 to 4,885,759 nleG2-3 NIAGMN_25125: nleG6-2 - DUF1076 domain-containing protein, at 4,885,832 to 4,886,461 nleG6-2 NIAGMN_25130: nleG5-2 - T3SS effector NleG family protein, at 4,886,543 to 4,887,184 nleG5-2 NIAGMN_25135: NIAGMN_25135 - DinI-like protein Z2083/ECs2153, at 4,887,346 to 4,887,660 _25135 NIAGMN_25140: ydfJ - Putative transporter YdfJ, at 4,887,720 to 4,889,003 ydfJ Position (kb) 4886 4887 4888Strain fitness (log2 ratio) -2 -1 0 1at 4887.963 kb on + strand, within ydfJ

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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4,887,963 + ydfJ NIAGMN_25140 0.19 -2.1

Or see this region's nucleotide sequence