Strain Fitness in Escherichia coli ECRC102 around NIAGMN_24370

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntycfT and lolC are separated by 261 nucleotideslolC and lolD overlap by 8 nucleotideslolD and lolE are separated by 5 nucleotides NIAGMN_24365: ycfT - Inner membrane protein YcfT, at 4,766,965 to 4,768,038 ycfT NIAGMN_24370: lolC - lipoprotein-releasing ABC transporter permease subunit LolC, at 4,768,300 to 4,769,499 lolC NIAGMN_24375: lolD - lipoprotein-releasing ABC transporter ATP-binding protein LolD, at 4,769,492 to 4,770,193 lolD NIAGMN_24380: lolE - lipoprotein-releasing ABC transporter permease subunit LolE, at 4,770,199 to 4,771,437 lolE Position (kb) 4768 4769 4770Strain fitness (log2 ratio) -1 0 1at 4767.447 kb on - strand, within ycfTat 4767.571 kb on + strand, within ycfTat 4767.953 kb on + strandat 4767.994 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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4,767,447 - ycfT NIAGMN_24365 0.45 -0.9
4,767,571 + ycfT NIAGMN_24365 0.56 -0.7
4,767,953 + -0.3
4,767,994 - -0.3

Or see this region's nucleotide sequence