Strain Fitness in Escherichia coli ECRC102 around NIAGMN_24245

Experiment: Bas14

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntplsX and fabH are separated by 67 nucleotidesfabH and NIAGMN_24250 are separated by 15 nucleotidesNIAGMN_24250 and fabG are separated by 12 nucleotides NIAGMN_24240: plsX - phosphate acyltransferase PlsX, at 4,740,488 to 4,741,528 plsX NIAGMN_24245: fabH - beta-ketoacyl-ACP synthase III, at 4,741,596 to 4,742,549 fabH NIAGMN_24250: NIAGMN_24250 - ACP S-malonyltransferase, at 4,742,565 to 4,743,494 _24250 NIAGMN_24255: fabG - 3-oxoacyl-ACP reductase FabG, at 4,743,507 to 4,744,241 fabG Position (kb) 4741 4742 4743Strain fitness (log2 ratio) -1 0 1 2at 4740.607 kb on + strand, within plsXat 4740.810 kb on + strand, within plsXat 4740.859 kb on - strand, within plsXat 4741.026 kb on + strand, within plsXat 4741.039 kb on + strand, within plsXat 4741.081 kb on + strand, within plsXat 4741.081 kb on + strand, within plsXat 4741.088 kb on + strand, within plsXat 4741.097 kb on + strand, within plsXat 4741.260 kb on + strand, within plsXat 4741.475 kb on + strandat 4741.568 kb on + strandat 4741.568 kb on + strandat 4741.568 kb on + strandat 4741.568 kb on + strandat 4741.572 kb on + strandat 4742.547 kb on + strandat 4742.547 kb on + strandat 4742.547 kb on + strandat 4743.492 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
remove
4,740,607 + plsX NIAGMN_24240 0.11 +0.8
4,740,810 + plsX NIAGMN_24240 0.31 +0.7
4,740,859 - plsX NIAGMN_24240 0.36 +0.3
4,741,026 + plsX NIAGMN_24240 0.52 +1.7
4,741,039 + plsX NIAGMN_24240 0.53 -1.3
4,741,081 + plsX NIAGMN_24240 0.57 +0.1
4,741,081 + plsX NIAGMN_24240 0.57 +2.7
4,741,088 + plsX NIAGMN_24240 0.58 -0.6
4,741,097 + plsX NIAGMN_24240 0.59 +1.1
4,741,260 + plsX NIAGMN_24240 0.74 -1.0
4,741,475 + -0.3
4,741,568 + +0.9
4,741,568 + -0.3
4,741,568 + -1.1
4,741,568 + +0.5
4,741,572 + -0.8
4,742,547 + -0.6
4,742,547 + +0.7
4,742,547 + -0.9
4,743,492 + -0.3

Or see this region's nucleotide sequence