Strain Fitness in Escherichia coli ECRC102 around NIAGMN_20180

Experiment: Bas14

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas14
3,980,617	+	frc	NIAGMN_20175	0.27	-0.5
3,980,691	+	frc	NIAGMN_20175	0.32	+1.4
3,981,014	-	frc	NIAGMN_20175	0.58	-1.0
3,981,089	+	frc	NIAGMN_20175	0.64	+2.4
3,981,333	+	frc	NIAGMN_20175	0.84	+0.3
3,981,584	+				+0.3
3,981,625	-				+2.9
3,981,651	+				+0.3
3,981,663	+				+1.3
3,981,677	+				+0.7
3,981,730	+				+1.9
3,981,763	+	oxc	NIAGMN_20180	0.10	+1.0
3,981,894	+	oxc	NIAGMN_20180	0.18	+0.3
3,981,895	-	oxc	NIAGMN_20180	0.18	-0.7
3,981,926	+	oxc	NIAGMN_20180	0.20	-0.1
3,981,926	+	oxc	NIAGMN_20180	0.20	+0.6
3,981,927	-	oxc	NIAGMN_20180	0.20	+2.4
3,981,999	+	oxc	NIAGMN_20180	0.24	+0.3
3,982,232	+	oxc	NIAGMN_20180	0.38	+1.6
3,982,350	+	oxc	NIAGMN_20180	0.45	+0.7
3,982,813	+	oxc	NIAGMN_20180	0.72	-1.1
3,982,813	+	oxc	NIAGMN_20180	0.72	+0.1
3,982,930	-	oxc	NIAGMN_20180	0.79	+0.4
3,982,975	+	oxc	NIAGMN_20180	0.82	+0.3
3,983,102	+	oxc	NIAGMN_20180	0.89	+0.3
3,983,200	-				-0.3
3,983,658	-	yfdV	NIAGMN_20185	0.32	+0.3
3,983,838	+	yfdV	NIAGMN_20185	0.51	-1.1
3,983,879	+	yfdV	NIAGMN_20185	0.56	-0.1
3,984,202	+	yfdV	NIAGMN_20185	0.90	-0.6
3,984,239	+				-0.7
3,984,274	+				-0.3