Strain Fitness in Escherichia coli ECRC102 around NIAGMN_18735

Experiment: Bas14

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntxerD and NIAGMN_18735 are separated by 1 nucleotidesNIAGMN_18735 and NIAGMN_18740 are separated by 203 nucleotides NIAGMN_18730: xerD - site-specific integrase, at 3,703,256 to 3,704,461 xerD NIAGMN_18735: NIAGMN_18735 - integrase, at 3,704,463 to 3,705,569 _18735 NIAGMN_18740: NIAGMN_18740 - DNA-binding protein, at 3,705,773 to 3,707,404 _18740 Position (kb) 3704 3705 3706Strain fitness (log2 ratio) -1 0 1at 3704.228 kb on + strand, within xerDat 3704.361 kb on + strandat 3704.381 kb on + strandat 3705.254 kb on + strand, within NIAGMN_18735at 3706.001 kb on - strand, within NIAGMN_18740at 3706.417 kb on + strand, within NIAGMN_18740

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
remove
3,704,228 + xerD NIAGMN_18730 0.81 +0.0
3,704,361 + +0.3
3,704,381 + -0.1
3,705,254 + NIAGMN_18735 0.71 +0.5
3,706,001 - NIAGMN_18740 0.14 -0.1
3,706,417 + NIAGMN_18740 0.39 -0.1

Or see this region's nucleotide sequence