Strain Fitness in Escherichia coli ECRC102 around NIAGMN_18350

Experiment: Bas14

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas14
3,627,783	+	hycA	NIAGMN_18340	0.51	-0.6
3,627,784	-	hycA	NIAGMN_18340	0.51	-0.8
3,627,786	+	hycA	NIAGMN_18340	0.51	-0.9
3,627,786	+	hycA	NIAGMN_18340	0.51	+1.0
3,627,786	+	hycA	NIAGMN_18340	0.51	-0.7
3,627,786	+	hycA	NIAGMN_18340	0.51	+2.1
3,627,786	+	hycA	NIAGMN_18340	0.51	+0.2
3,627,787	-	hycA	NIAGMN_18340	0.52	-1.2
3,627,903	+	hycA	NIAGMN_18340	0.77	-0.5
3,627,903	+	hycA	NIAGMN_18340	0.77	+0.1
3,627,903	+	hycA	NIAGMN_18340	0.77	-0.5
3,627,937	+	hycA	NIAGMN_18340	0.84	+0.1
3,627,937	+	hycA	NIAGMN_18340	0.84	+0.1
3,627,937	+	hycA	NIAGMN_18340	0.84	+0.9
3,627,937	+	hycA	NIAGMN_18340	0.84	-0.4
3,627,937	+	hycA	NIAGMN_18340	0.84	+2.9
3,627,937	+	hycA	NIAGMN_18340	0.84	-0.3
3,627,937	+	hycA	NIAGMN_18340	0.84	-1.0
3,627,937	+	hycA	NIAGMN_18340	0.84	-0.3
3,627,937	+	hycA	NIAGMN_18340	0.84	+0.3
3,627,937	+	hycA	NIAGMN_18340	0.84	+0.6
3,627,937	+	hycA	NIAGMN_18340	0.84	-0.3
3,627,937	+	hycA	NIAGMN_18340	0.84	-2.3
3,627,938	-	hycA	NIAGMN_18340	0.84	-0.6
3,627,938	-	hycA	NIAGMN_18340	0.84	+0.3
3,627,939	+	hycA	NIAGMN_18340	0.84	-0.4
3,627,939	+	hycA	NIAGMN_18340	0.84	+0.5
3,627,939	+	hycA	NIAGMN_18340	0.84	+1.5
3,627,939	+	hycA	NIAGMN_18340	0.84	-0.3
3,627,940	-	hycA	NIAGMN_18340	0.85	+0.9
3,627,940	-	hycA	NIAGMN_18340	0.85	+0.9
3,627,973	+				-0.6
3,627,973	+				-1.1
3,628,256	+	hycB	NIAGMN_18345	0.20	-0.2
3,628,256	+	hycB	NIAGMN_18345	0.20	+1.0
3,628,257	-	hycB	NIAGMN_18345	0.20	-1.2
3,628,257	-	hycB	NIAGMN_18345	0.20	+0.3
3,628,257	-	hycB	NIAGMN_18345	0.20	+2.1
3,628,382	+	hycB	NIAGMN_18345	0.40	+0.3
3,628,453	-	hycB	NIAGMN_18345	0.52	+1.0
3,628,572	+	hycB	NIAGMN_18345	0.71	-2.3
3,628,618	-	hycB	NIAGMN_18345	0.79	-1.8
3,628,669	-	hycB	NIAGMN_18345	0.87	-1.2
3,628,669	-	hycB	NIAGMN_18345	0.87	-0.3
3,628,741	-				+0.9
3,628,869	-				+0.9
3,628,875	+				+0.6
3,628,875	+				+1.2
3,628,875	+				+1.1
3,628,876	-				-1.4
3,628,943	-	hycC	NIAGMN_18350	0.11	+0.9
3,628,947	+	hycC	NIAGMN_18350	0.11	-0.3
3,628,947	+	hycC	NIAGMN_18350	0.11	+2.7
3,628,947	+	hycC	NIAGMN_18350	0.11	+1.9
3,628,947	+	hycC	NIAGMN_18350	0.11	-1.3
3,628,947	+	hycC	NIAGMN_18350	0.11	+0.3
3,628,948	-	hycC	NIAGMN_18350	0.11	+0.6
3,628,988	+	hycC	NIAGMN_18350	0.13	-0.6
3,628,988	+	hycC	NIAGMN_18350	0.13	+0.3
3,628,988	+	hycC	NIAGMN_18350	0.13	+1.3
3,629,023	-	hycC	NIAGMN_18350	0.15	-0.4
3,629,078	+	hycC	NIAGMN_18350	0.18	+0.9
3,629,078	+	hycC	NIAGMN_18350	0.18	+1.2
3,629,078	+	hycC	NIAGMN_18350	0.18	-1.0
3,629,138	-	hycC	NIAGMN_18350	0.22	+1.7
3,629,303	+	hycC	NIAGMN_18350	0.31	-0.4
3,629,304	-	hycC	NIAGMN_18350	0.31	-0.7
3,629,375	+	hycC	NIAGMN_18350	0.35	-1.5
3,629,444	+	hycC	NIAGMN_18350	0.38	-0.0
3,629,450	-	hycC	NIAGMN_18350	0.39	+1.4
3,629,479	+	hycC	NIAGMN_18350	0.40	-1.3
3,629,479	+	hycC	NIAGMN_18350	0.40	+0.6
3,629,480	-	hycC	NIAGMN_18350	0.40	+2.0
3,629,502	-	hycC	NIAGMN_18350	0.42	-0.1
3,629,543	+	hycC	NIAGMN_18350	0.44	-0.0
3,629,544	-	hycC	NIAGMN_18350	0.44	+1.3
3,629,572	-	hycC	NIAGMN_18350	0.45	+0.3
3,629,588	+	hycC	NIAGMN_18350	0.46	+0.4
3,629,588	+	hycC	NIAGMN_18350	0.46	-0.7
3,629,588	+	hycC	NIAGMN_18350	0.46	-0.5
3,629,588	+	hycC	NIAGMN_18350	0.46	-1.8
3,629,588	+	hycC	NIAGMN_18350	0.46	-0.1
3,629,588	+	hycC	NIAGMN_18350	0.46	-0.7
3,629,588	+	hycC	NIAGMN_18350	0.46	+2.3
3,629,588	+	hycC	NIAGMN_18350	0.46	+0.9
3,629,589	-	hycC	NIAGMN_18350	0.46	-0.9
3,629,589	-	hycC	NIAGMN_18350	0.46	+0.3
3,629,589	-	hycC	NIAGMN_18350	0.46	-0.1
3,629,589	-	hycC	NIAGMN_18350	0.46	+0.1
3,629,603	-	hycC	NIAGMN_18350	0.47	+0.7
3,629,610	+	hycC	NIAGMN_18350	0.47	+1.2
3,629,755	+	hycC	NIAGMN_18350	0.55	-0.1
3,629,755	+	hycC	NIAGMN_18350	0.55	+1.9
3,629,756	-	hycC	NIAGMN_18350	0.55	+0.8
3,629,822	+	hycC	NIAGMN_18350	0.59	-0.0
3,629,822	+	hycC	NIAGMN_18350	0.59	+1.1
3,629,843	+	hycC	NIAGMN_18350	0.60	-0.0
3,629,855	+	hycC	NIAGMN_18350	0.61	-0.9
3,629,855	+	hycC	NIAGMN_18350	0.61	+0.1
3,629,855	+	hycC	NIAGMN_18350	0.61	+0.6
3,629,856	-	hycC	NIAGMN_18350	0.61	-0.1
3,629,860	+	hycC	NIAGMN_18350	0.61	-0.5
3,629,861	-	hycC	NIAGMN_18350	0.61	+1.0
3,629,922	-	hycC	NIAGMN_18350	0.65	+0.4
3,629,922	-	hycC	NIAGMN_18350	0.65	+0.5
3,629,925	+	hycC	NIAGMN_18350	0.65	-0.4
3,629,925	+	hycC	NIAGMN_18350	0.65	-1.3
3,629,925	+	hycC	NIAGMN_18350	0.65	+0.3
3,629,925	+	hycC	NIAGMN_18350	0.65	-0.1
3,629,926	-	hycC	NIAGMN_18350	0.65	-0.7
3,629,951	+	hycC	NIAGMN_18350	0.66	+0.8
3,629,952	-	hycC	NIAGMN_18350	0.66	-1.1
3,630,032	+	hycC	NIAGMN_18350	0.71	+2.3
3,630,032	+	hycC	NIAGMN_18350	0.71	+1.4
3,630,033	-	hycC	NIAGMN_18350	0.71	+1.2
3,630,121	+	hycC	NIAGMN_18350	0.75	+2.5
3,630,121	+	hycC	NIAGMN_18350	0.75	+0.9
3,630,121	+	hycC	NIAGMN_18350	0.75	-1.8
3,630,122	-	hycC	NIAGMN_18350	0.75	+0.3
3,630,122	-	hycC	NIAGMN_18350	0.75	+0.3
3,630,122	-	hycC	NIAGMN_18350	0.75	-1.6
3,630,151	+	hycC	NIAGMN_18350	0.77	-0.9
3,630,203	-	hycC	NIAGMN_18350	0.80	+1.2
3,630,224	+	hycC	NIAGMN_18350	0.81	-0.4
3,630,224	+	hycC	NIAGMN_18350	0.81	+1.2
3,630,224	+	hycC	NIAGMN_18350	0.81	-0.7
3,630,225	-	hycC	NIAGMN_18350	0.81	+0.3
3,630,379	+	hycC	NIAGMN_18350	0.90	+1.4
3,630,379	+	hycC	NIAGMN_18350	0.90	+1.1
3,630,380	-	hycC	NIAGMN_18350	0.90	-0.4
3,630,380	-	hycC	NIAGMN_18350	0.90	-0.9
3,630,548	+				+0.6
3,630,583	-				-0.1
3,630,583	-				+1.9
3,630,583	-				-0.3
3,630,637	+				-0.4
3,630,776	+	hycD	NIAGMN_18355	0.22	+1.0
3,630,777	-	hycD	NIAGMN_18355	0.22	-0.0
3,630,777	-	hycD	NIAGMN_18355	0.22	+0.2
3,630,777	-	hycD	NIAGMN_18355	0.22	-1.4
3,630,777	-	hycD	NIAGMN_18355	0.22	+3.1
3,630,870	+	hycD	NIAGMN_18355	0.32	-1.0
3,630,870	+	hycD	NIAGMN_18355	0.32	-0.1
3,630,870	+	hycD	NIAGMN_18355	0.32	+0.5
3,630,870	+	hycD	NIAGMN_18355	0.32	+0.9
3,630,870	+	hycD	NIAGMN_18355	0.32	-0.9
3,630,870	+	hycD	NIAGMN_18355	0.32	-0.1
3,630,871	-	hycD	NIAGMN_18355	0.32	-0.1
3,630,871	-	hycD	NIAGMN_18355	0.32	-0.7
3,630,871	-	hycD	NIAGMN_18355	0.32	-0.4
3,630,871	-	hycD	NIAGMN_18355	0.32	+1.5
3,630,871	-	hycD	NIAGMN_18355	0.32	+2.2
3,630,875	+	hycD	NIAGMN_18355	0.33	-0.6
3,630,875	+	hycD	NIAGMN_18355	0.33	+1.2
3,630,876	-	hycD	NIAGMN_18355	0.33	-1.1
3,630,876	-	hycD	NIAGMN_18355	0.33	+0.9
3,631,064	+	hycD	NIAGMN_18355	0.53	-0.9
3,631,205	+	hycD	NIAGMN_18355	0.69	-0.1
3,631,289	-	hycD	NIAGMN_18355	0.78	+2.2
3,631,423	+				+0.3
3,631,423	+				+3.3
3,631,426	+				-0.3
3,631,426	+				-1.2
3,631,439	-				-1.2
3,631,439	-				+1.5
3,631,497	+				-1.2
3,631,497	+				-1.0