Strain Fitness in Escherichia coli ECRC102 around NIAGMN_17120

Experiment: Bas14

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas14
3,385,549	+	glpX	NIAGMN_17110	0.63	-0.5
3,385,549	+	glpX	NIAGMN_17110	0.63	-0.9
3,385,549	+	glpX	NIAGMN_17110	0.63	+1.3
3,385,549	+	glpX	NIAGMN_17110	0.63	+0.1
3,385,550	-	glpX	NIAGMN_17110	0.63	+0.7
3,385,614	+	glpX	NIAGMN_17110	0.70	-0.9
3,385,657	+	glpX	NIAGMN_17110	0.75	-0.2
3,385,732	+	glpX	NIAGMN_17110	0.82	-0.8
3,385,850	+				-0.6
3,385,851	-				-1.5
3,385,851	-				-0.3
3,385,851	-				-0.9
3,385,851	-				+0.4
3,385,878	+				-1.4
3,385,878	+				-0.6
3,385,878	+				+0.0
3,385,878	+				-0.8
3,385,879	-				+1.5
3,385,879	-				-0.6
3,385,881	+				+0.4
3,385,881	+				-0.3
3,385,881	+				-0.3
3,385,882	-				+3.0
3,385,882	-				-0.0
3,385,882	-				+0.4
3,385,883	+				+0.5
3,385,884	-				+0.4
3,385,884	-				-0.7
3,385,898	-				+0.9
3,385,911	+				+2.3
3,385,911	+				+1.2
3,386,007	+	fumE	NIAGMN_17115	0.16	+0.5
3,386,007	+	fumE	NIAGMN_17115	0.16	-0.2
3,386,007	+	fumE	NIAGMN_17115	0.16	+1.4
3,386,078	-	fumE	NIAGMN_17115	0.30	-0.8
3,386,078	-	fumE	NIAGMN_17115	0.30	+0.4
3,386,122	-	fumE	NIAGMN_17115	0.39	-0.9
3,386,212	+	fumE	NIAGMN_17115	0.56	+0.4
3,386,268	+	fumE	NIAGMN_17115	0.67	+2.4
3,386,283	+	fumE	NIAGMN_17115	0.70	-0.3
3,386,289	-	fumE	NIAGMN_17115	0.72	+1.6
3,386,308	+	fumE	NIAGMN_17115	0.75	-1.0
3,386,309	-	fumE	NIAGMN_17115	0.75	-1.7
3,386,402	+				+1.7
3,386,414	+				+0.4
3,386,424	-				+0.4
3,386,491	+				-0.8
3,386,492	-				+1.4
3,386,504	+	coaA	NIAGMN_17120	0.10	+0.3
3,386,505	-	coaA	NIAGMN_17120	0.11	-0.6
3,386,520	-	coaA	NIAGMN_17120	0.13	-1.3
3,386,542	+	coaA	NIAGMN_17120	0.16	+0.5
3,386,543	-	coaA	NIAGMN_17120	0.16	+0.7
3,386,543	-	coaA	NIAGMN_17120	0.16	+0.4
3,386,601	-	coaA	NIAGMN_17120	0.24	-1.3
3,386,623	-	coaA	NIAGMN_17120	0.27	-1.0
3,386,623	-	coaA	NIAGMN_17120	0.27	-2.2
3,386,623	-	coaA	NIAGMN_17120	0.27	+0.7
3,386,688	+	coaA	NIAGMN_17120	0.36	+0.7
3,386,688	+	coaA	NIAGMN_17120	0.36	+2.0
3,386,688	+	coaA	NIAGMN_17120	0.36	-0.0
3,386,689	-	coaA	NIAGMN_17120	0.36	-1.0
3,386,689	-	coaA	NIAGMN_17120	0.36	+0.7
3,386,693	+	coaA	NIAGMN_17120	0.37	-0.5
3,386,693	+	coaA	NIAGMN_17120	0.37	-1.1
3,386,693	+	coaA	NIAGMN_17120	0.37	+0.4
3,386,693	+	coaA	NIAGMN_17120	0.37	+1.3
3,386,693	+	coaA	NIAGMN_17120	0.37	+1.2
3,386,694	-	coaA	NIAGMN_17120	0.37	-2.8
3,386,694	-	coaA	NIAGMN_17120	0.37	-0.9
3,386,798	+	coaA	NIAGMN_17120	0.52	-0.0
3,386,798	+	coaA	NIAGMN_17120	0.52	+1.0
3,386,799	-	coaA	NIAGMN_17120	0.52	+0.7
3,386,799	-	coaA	NIAGMN_17120	0.52	+0.1
3,386,799	-	coaA	NIAGMN_17120	0.52	-1.6
3,386,799	-	coaA	NIAGMN_17120	0.52	+1.1
3,386,812	-	coaA	NIAGMN_17120	0.54	+0.7
3,386,906	+	coaA	NIAGMN_17120	0.67	+0.3
3,386,949	-	coaA	NIAGMN_17120	0.73	-0.8
3,386,963	+	coaA	NIAGMN_17120	0.75	+0.2
3,386,964	-	coaA	NIAGMN_17120	0.75	-1.0
3,387,036	+	coaA	NIAGMN_17120	0.85	-1.0
3,387,036	+	coaA	NIAGMN_17120	0.85	+1.0
3,387,104	-				+1.0
3,387,116	+				+1.1
3,387,127	-				+1.1
3,387,127	-				-0.3
3,387,127	-				+0.7
3,387,141	+				+0.6
3,387,155	-				-0.8
3,387,199	-	cysA	NIAGMN_17125	0.12	-0.8
3,387,323	-	cysA	NIAGMN_17125	0.31	-0.0
3,387,323	-	cysA	NIAGMN_17125	0.31	-0.3
3,387,323	-	cysA	NIAGMN_17125	0.31	+0.0
3,387,379	-	cysA	NIAGMN_17125	0.39	-0.8
3,387,379	-	cysA	NIAGMN_17125	0.39	-1.0
3,387,379	-	cysA	NIAGMN_17125	0.39	-0.6
3,387,379	-	cysA	NIAGMN_17125	0.39	-2.5
3,387,445	-	cysA	NIAGMN_17125	0.49	+0.4
3,387,445	-	cysA	NIAGMN_17125	0.49	-0.8
3,387,445	-	cysA	NIAGMN_17125	0.49	+2.3
3,387,551	-	cysA	NIAGMN_17125	0.64	-1.2
3,387,612	+	cysA	NIAGMN_17125	0.73	+0.4
3,387,613	-	cysA	NIAGMN_17125	0.73	-0.5
3,387,767	+				+0.7
3,387,782	-				+1.0
3,387,792	+				+3.1
3,387,793	-				+0.4
3,387,838	+				+1.7
3,387,839	-				-0.4
3,387,909	+	ecfA2	NIAGMN_17130	0.18	+0.4
3,387,909	+	ecfA2	NIAGMN_17130	0.18	-0.3
3,387,910	-	ecfA2	NIAGMN_17130	0.18	+0.5
3,387,910	-	ecfA2	NIAGMN_17130	0.18	+0.2
3,387,972	+	ecfA2	NIAGMN_17130	0.27	-0.3