Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hybO and hybA are separated by 2 nucleotides hybA and hybB overlap by 11 nucleotides hybB and hybC overlap by 4 nucleotides
NIAGMN_16770: hybO - hydrogenase 2 small subunit, at 3,315,115 to 3,316,233
hybO
NIAGMN_16775: hybA - hydrogenase 2 operon protein HybA, at 3,316,236 to 3,317,222
hybA
NIAGMN_16780: hybB - Ni/Fe-hydrogenase cytochrome b subunit, at 3,317,212 to 3,318,390
hybB
NIAGMN_16785: hybC - hydrogenase 2 large subunit, at 3,318,387 to 3,320,090
hybC
Position (kb) 3317
3318
3319 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3316.247 kb on + strand at 3316.247 kb on + strand at 3316.247 kb on + strand at 3316.248 kb on - strand at 3316.378 kb on + strand, within hybA at 3316.379 kb on - strand, within hybA at 3316.412 kb on + strand, within hybA at 3316.430 kb on + strand, within hybA at 3316.481 kb on + strand, within hybA at 3316.482 kb on - strand, within hybA at 3316.482 kb on - strand, within hybA at 3316.487 kb on + strand, within hybA at 3316.554 kb on + strand, within hybA at 3316.555 kb on - strand, within hybA at 3316.560 kb on - strand, within hybA at 3316.571 kb on + strand, within hybA at 3316.571 kb on + strand, within hybA at 3316.571 kb on + strand, within hybA at 3316.571 kb on + strand, within hybA at 3316.572 kb on - strand, within hybA at 3316.572 kb on - strand, within hybA at 3316.704 kb on + strand, within hybA at 3316.704 kb on + strand, within hybA at 3316.704 kb on + strand, within hybA at 3316.725 kb on + strand, within hybA at 3316.725 kb on + strand, within hybA at 3316.751 kb on + strand, within hybA at 3316.751 kb on + strand, within hybA at 3316.751 kb on + strand, within hybA at 3316.751 kb on + strand, within hybA at 3316.751 kb on + strand, within hybA at 3316.751 kb on + strand, within hybA at 3316.752 kb on - strand, within hybA at 3316.752 kb on - strand, within hybA at 3316.752 kb on - strand, within hybA at 3316.752 kb on - strand, within hybA at 3316.752 kb on - strand, within hybA at 3316.816 kb on + strand, within hybA at 3316.816 kb on + strand, within hybA at 3316.817 kb on - strand, within hybA at 3316.950 kb on + strand, within hybA at 3316.950 kb on + strand, within hybA at 3316.950 kb on + strand, within hybA at 3316.950 kb on + strand, within hybA at 3316.951 kb on - strand, within hybA at 3316.951 kb on - strand, within hybA at 3316.951 kb on - strand, within hybA at 3316.951 kb on - strand, within hybA at 3316.951 kb on - strand, within hybA at 3316.958 kb on + strand, within hybA at 3316.972 kb on - strand, within hybA at 3316.972 kb on - strand, within hybA at 3317.041 kb on - strand, within hybA at 3317.100 kb on - strand, within hybA at 3317.115 kb on + strand, within hybA at 3317.117 kb on + strand, within hybA at 3317.117 kb on + strand, within hybA at 3317.118 kb on - strand, within hybA at 3317.118 kb on - strand, within hybA at 3317.118 kb on - strand, within hybA at 3317.131 kb on + strand at 3317.132 kb on - strand at 3317.292 kb on + strand at 3317.293 kb on - strand at 3317.438 kb on + strand, within hybB at 3317.438 kb on + strand, within hybB at 3317.438 kb on + strand, within hybB at 3317.440 kb on + strand, within hybB at 3317.440 kb on + strand, within hybB at 3317.440 kb on + strand, within hybB at 3317.440 kb on + strand, within hybB at 3317.440 kb on + strand, within hybB at 3317.440 kb on + strand, within hybB at 3317.441 kb on - strand, within hybB at 3317.441 kb on - strand, within hybB at 3317.441 kb on - strand, within hybB at 3317.441 kb on - strand, within hybB at 3317.441 kb on - strand, within hybB at 3317.449 kb on - strand, within hybB at 3317.461 kb on + strand, within hybB at 3317.462 kb on - strand, within hybB at 3317.549 kb on - strand, within hybB at 3317.564 kb on - strand, within hybB at 3317.569 kb on + strand, within hybB at 3317.622 kb on + strand, within hybB at 3317.623 kb on - strand, within hybB at 3317.632 kb on + strand, within hybB at 3317.632 kb on + strand, within hybB at 3317.632 kb on + strand, within hybB at 3317.632 kb on + strand, within hybB at 3317.632 kb on + strand, within hybB at 3317.633 kb on - strand, within hybB at 3317.633 kb on - strand, within hybB at 3317.700 kb on - strand, within hybB at 3317.801 kb on - strand, within hybB at 3317.801 kb on - strand, within hybB at 3317.827 kb on + strand, within hybB at 3317.827 kb on + strand, within hybB at 3318.018 kb on + strand, within hybB at 3318.018 kb on + strand, within hybB at 3318.018 kb on + strand, within hybB at 3318.018 kb on + strand, within hybB at 3318.019 kb on - strand, within hybB at 3318.019 kb on - strand, within hybB at 3318.179 kb on + strand, within hybB at 3318.179 kb on + strand, within hybB at 3318.179 kb on + strand, within hybB at 3318.180 kb on - strand, within hybB at 3318.205 kb on + strand, within hybB at 3318.205 kb on + strand, within hybB at 3318.245 kb on - strand, within hybB at 3318.245 kb on - strand, within hybB at 3318.307 kb on + strand at 3318.307 kb on + strand at 3318.307 kb on + strand at 3318.308 kb on - strand at 3318.308 kb on - strand at 3318.315 kb on - strand at 3318.336 kb on - strand at 3318.336 kb on - strand at 3318.363 kb on + strand at 3318.401 kb on + strand at 3318.401 kb on + strand at 3318.401 kb on + strand at 3318.401 kb on + strand at 3318.401 kb on + strand at 3318.402 kb on - strand at 3318.402 kb on - strand at 3318.402 kb on - strand at 3318.405 kb on - strand at 3318.405 kb on - strand at 3318.405 kb on - strand at 3318.436 kb on + strand at 3318.437 kb on - strand at 3318.437 kb on - strand at 3318.563 kb on + strand, within hybC at 3318.563 kb on + strand, within hybC at 3318.564 kb on - strand, within hybC at 3318.564 kb on - strand, within hybC at 3318.564 kb on - strand, within hybC at 3318.574 kb on + strand, within hybC at 3318.574 kb on + strand, within hybC at 3318.574 kb on + strand, within hybC at 3318.575 kb on - strand, within hybC at 3318.575 kb on - strand, within hybC at 3318.575 kb on - strand, within hybC at 3318.575 kb on - strand, within hybC at 3318.578 kb on + strand, within hybC at 3318.578 kb on + strand, within hybC at 3318.578 kb on + strand, within hybC at 3318.578 kb on + strand, within hybC at 3318.578 kb on + strand, within hybC at 3318.579 kb on - strand, within hybC at 3318.581 kb on + strand, within hybC at 3318.582 kb on - strand, within hybC at 3318.582 kb on - strand, within hybC at 3318.582 kb on - strand, within hybC at 3318.582 kb on - strand, within hybC at 3318.654 kb on + strand, within hybC at 3318.654 kb on + strand, within hybC at 3318.654 kb on + strand, within hybC at 3318.655 kb on - strand, within hybC at 3318.662 kb on + strand, within hybC at 3318.701 kb on - strand, within hybC at 3318.711 kb on + strand, within hybC at 3318.882 kb on - strand, within hybC at 3318.957 kb on + strand, within hybC at 3319.045 kb on + strand, within hybC at 3319.046 kb on - strand, within hybC at 3319.046 kb on - strand, within hybC at 3319.110 kb on + strand, within hybC at 3319.110 kb on + strand, within hybC at 3319.110 kb on + strand, within hybC at 3319.111 kb on - strand, within hybC at 3319.111 kb on - strand, within hybC at 3319.111 kb on - strand, within hybC at 3319.111 kb on - strand, within hybC at 3319.111 kb on - strand, within hybC at 3319.111 kb on - strand, within hybC at 3319.111 kb on - strand, within hybC at 3319.111 kb on - strand, within hybC at 3319.111 kb on - strand, within hybC at 3319.159 kb on - strand, within hybC at 3319.159 kb on - strand, within hybC at 3319.169 kb on + strand, within hybC at 3319.170 kb on - strand, within hybC at 3319.230 kb on + strand, within hybC at 3319.230 kb on + strand, within hybC at 3319.231 kb on - strand, within hybC at 3319.231 kb on - strand, within hybC at 3319.263 kb on - strand, within hybC at 3319.293 kb on + strand, within hybC at 3319.293 kb on + strand, within hybC at 3319.294 kb on - strand, within hybC at 3319.320 kb on + strand, within hybC at 3319.321 kb on - strand, within hybC at 3319.350 kb on + strand, within hybC at 3319.350 kb on + strand, within hybC at 3319.350 kb on + strand, within hybC at 3319.351 kb on - strand, within hybC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 3,316,247 + +1.8 3,316,247 + -0.2 3,316,247 + -0.6 3,316,248 - -0.9 3,316,378 + hybA NIAGMN_16775 0.14 -0.9 3,316,379 - hybA NIAGMN_16775 0.14 -1.3 3,316,412 + hybA NIAGMN_16775 0.18 -0.8 3,316,430 + hybA NIAGMN_16775 0.20 +1.7 3,316,481 + hybA NIAGMN_16775 0.25 +0.7 3,316,482 - hybA NIAGMN_16775 0.25 +1.0 3,316,482 - hybA NIAGMN_16775 0.25 -1.3 3,316,487 + hybA NIAGMN_16775 0.25 -0.6 3,316,554 + hybA NIAGMN_16775 0.32 +0.4 3,316,555 - hybA NIAGMN_16775 0.32 +1.6 3,316,560 - hybA NIAGMN_16775 0.33 +0.4 3,316,571 + hybA NIAGMN_16775 0.34 +0.1 3,316,571 + hybA NIAGMN_16775 0.34 -0.6 3,316,571 + hybA NIAGMN_16775 0.34 +1.4 3,316,571 + hybA NIAGMN_16775 0.34 +2.0 3,316,572 - hybA NIAGMN_16775 0.34 -1.1 3,316,572 - hybA NIAGMN_16775 0.34 -0.8 3,316,704 + hybA NIAGMN_16775 0.47 +1.2 3,316,704 + hybA NIAGMN_16775 0.47 +0.1 3,316,704 + hybA NIAGMN_16775 0.47 +0.7 3,316,725 + hybA NIAGMN_16775 0.50 -0.7 3,316,725 + hybA NIAGMN_16775 0.50 -0.2 3,316,751 + hybA NIAGMN_16775 0.52 -0.0 3,316,751 + hybA NIAGMN_16775 0.52 +0.1 3,316,751 + hybA NIAGMN_16775 0.52 +0.7 3,316,751 + hybA NIAGMN_16775 0.52 -2.5 3,316,751 + hybA NIAGMN_16775 0.52 +1.1 3,316,751 + hybA NIAGMN_16775 0.52 -1.0 3,316,752 - hybA NIAGMN_16775 0.52 -0.3 3,316,752 - hybA NIAGMN_16775 0.52 +0.2 3,316,752 - hybA NIAGMN_16775 0.52 +0.3 3,316,752 - hybA NIAGMN_16775 0.52 -0.9 3,316,752 - hybA NIAGMN_16775 0.52 -0.6 3,316,816 + hybA NIAGMN_16775 0.59 -0.0 3,316,816 + hybA NIAGMN_16775 0.59 +2.0 3,316,817 - hybA NIAGMN_16775 0.59 +0.4 3,316,950 + hybA NIAGMN_16775 0.72 +0.5 3,316,950 + hybA NIAGMN_16775 0.72 +0.3 3,316,950 + hybA NIAGMN_16775 0.72 -1.1 3,316,950 + hybA NIAGMN_16775 0.72 +0.4 3,316,951 - hybA NIAGMN_16775 0.72 -1.6 3,316,951 - hybA NIAGMN_16775 0.72 +0.8 3,316,951 - hybA NIAGMN_16775 0.72 -0.5 3,316,951 - hybA NIAGMN_16775 0.72 -1.5 3,316,951 - hybA NIAGMN_16775 0.72 -0.2 3,316,958 + hybA NIAGMN_16775 0.73 -0.6 3,316,972 - hybA NIAGMN_16775 0.75 +0.8 3,316,972 - hybA NIAGMN_16775 0.75 -0.1 3,317,041 - hybA NIAGMN_16775 0.82 +2.0 3,317,100 - hybA NIAGMN_16775 0.88 -1.7 3,317,115 + hybA NIAGMN_16775 0.89 -0.4 3,317,117 + hybA NIAGMN_16775 0.89 +1.3 3,317,117 + hybA NIAGMN_16775 0.89 -0.2 3,317,118 - hybA NIAGMN_16775 0.89 -0.3 3,317,118 - hybA NIAGMN_16775 0.89 +0.5 3,317,118 - hybA NIAGMN_16775 0.89 +1.3 3,317,131 + +1.3 3,317,132 - +0.8 3,317,292 + -0.8 3,317,293 - +1.7 3,317,438 + hybB NIAGMN_16780 0.19 -1.6 3,317,438 + hybB NIAGMN_16780 0.19 +1.0 3,317,438 + hybB NIAGMN_16780 0.19 -0.7 3,317,440 + hybB NIAGMN_16780 0.19 +1.1 3,317,440 + hybB NIAGMN_16780 0.19 -0.1 3,317,440 + hybB NIAGMN_16780 0.19 -0.0 3,317,440 + hybB NIAGMN_16780 0.19 +1.1 3,317,440 + hybB NIAGMN_16780 0.19 +0.3 3,317,440 + hybB NIAGMN_16780 0.19 +0.1 3,317,441 - hybB NIAGMN_16780 0.19 +0.7 3,317,441 - hybB NIAGMN_16780 0.19 +2.0 3,317,441 - hybB NIAGMN_16780 0.19 -0.5 3,317,441 - hybB NIAGMN_16780 0.19 -1.3 3,317,441 - hybB NIAGMN_16780 0.19 -0.0 3,317,449 - hybB NIAGMN_16780 0.20 +0.4 3,317,461 + hybB NIAGMN_16780 0.21 +0.5 3,317,462 - hybB NIAGMN_16780 0.21 -0.2 3,317,549 - hybB NIAGMN_16780 0.29 -0.3 3,317,564 - hybB NIAGMN_16780 0.30 +0.5 3,317,569 + hybB NIAGMN_16780 0.30 -2.2 3,317,622 + hybB NIAGMN_16780 0.35 +0.5 3,317,623 - hybB NIAGMN_16780 0.35 -0.6 3,317,632 + hybB NIAGMN_16780 0.36 -0.1 3,317,632 + hybB NIAGMN_16780 0.36 +0.2 3,317,632 + hybB NIAGMN_16780 0.36 -2.5 3,317,632 + hybB NIAGMN_16780 0.36 +0.7 3,317,632 + hybB NIAGMN_16780 0.36 +1.5 3,317,633 - hybB NIAGMN_16780 0.36 -1.5 3,317,633 - hybB NIAGMN_16780 0.36 +2.2 3,317,700 - hybB NIAGMN_16780 0.41 +1.0 3,317,801 - hybB NIAGMN_16780 0.50 +0.2 3,317,801 - hybB NIAGMN_16780 0.50 +1.6 3,317,827 + hybB NIAGMN_16780 0.52 -0.4 3,317,827 + hybB NIAGMN_16780 0.52 +3.7 3,318,018 + hybB NIAGMN_16780 0.68 +0.5 3,318,018 + hybB NIAGMN_16780 0.68 +0.3 3,318,018 + hybB NIAGMN_16780 0.68 -2.1 3,318,018 + hybB NIAGMN_16780 0.68 -1.0 3,318,019 - hybB NIAGMN_16780 0.68 -1.1 3,318,019 - hybB NIAGMN_16780 0.68 -1.0 3,318,179 + hybB NIAGMN_16780 0.82 -0.6 3,318,179 + hybB NIAGMN_16780 0.82 +0.8 3,318,179 + hybB NIAGMN_16780 0.82 -0.5 3,318,180 - hybB NIAGMN_16780 0.82 +1.6 3,318,205 + hybB NIAGMN_16780 0.84 -0.9 3,318,205 + hybB NIAGMN_16780 0.84 -1.6 3,318,245 - hybB NIAGMN_16780 0.88 -0.9 3,318,245 - hybB NIAGMN_16780 0.88 -0.8 3,318,307 + +0.2 3,318,307 + +1.0 3,318,307 + +0.5 3,318,308 - +0.8 3,318,308 - -0.3 3,318,315 - +0.2 3,318,336 - -0.0 3,318,336 - -0.3 3,318,363 + -0.1 3,318,401 + +0.4 3,318,401 + -0.1 3,318,401 + +0.4 3,318,401 + -1.3 3,318,401 + -0.0 3,318,402 - +0.4 3,318,402 - -0.9 3,318,402 - -1.9 3,318,405 - +0.4 3,318,405 - -1.3 3,318,405 - -0.3 3,318,436 + +2.0 3,318,437 - -0.6 3,318,437 - -1.7 3,318,563 + hybC NIAGMN_16785 0.10 +0.2 3,318,563 + hybC NIAGMN_16785 0.10 +1.0 3,318,564 - hybC NIAGMN_16785 0.10 +0.3 3,318,564 - hybC NIAGMN_16785 0.10 +0.7 3,318,564 - hybC NIAGMN_16785 0.10 -0.4 3,318,574 + hybC NIAGMN_16785 0.11 -0.8 3,318,574 + hybC NIAGMN_16785 0.11 +0.3 3,318,574 + hybC NIAGMN_16785 0.11 -2.1 3,318,575 - hybC NIAGMN_16785 0.11 -0.3 3,318,575 - hybC NIAGMN_16785 0.11 +1.0 3,318,575 - hybC NIAGMN_16785 0.11 -1.1 3,318,575 - hybC NIAGMN_16785 0.11 +0.1 3,318,578 + hybC NIAGMN_16785 0.11 +2.0 3,318,578 + hybC NIAGMN_16785 0.11 -0.7 3,318,578 + hybC NIAGMN_16785 0.11 -1.7 3,318,578 + hybC NIAGMN_16785 0.11 +0.3 3,318,578 + hybC NIAGMN_16785 0.11 +1.4 3,318,579 - hybC NIAGMN_16785 0.11 +2.0 3,318,581 + hybC NIAGMN_16785 0.11 -1.3 3,318,582 - hybC NIAGMN_16785 0.11 -0.4 3,318,582 - hybC NIAGMN_16785 0.11 +1.0 3,318,582 - hybC NIAGMN_16785 0.11 +0.2 3,318,582 - hybC NIAGMN_16785 0.11 -0.2 3,318,654 + hybC NIAGMN_16785 0.16 -0.0 3,318,654 + hybC NIAGMN_16785 0.16 +3.0 3,318,654 + hybC NIAGMN_16785 0.16 +2.0 3,318,655 - hybC NIAGMN_16785 0.16 +1.7 3,318,662 + hybC NIAGMN_16785 0.16 +2.0 3,318,701 - hybC NIAGMN_16785 0.18 +0.2 3,318,711 + hybC NIAGMN_16785 0.19 -0.3 3,318,882 - hybC NIAGMN_16785 0.29 -0.8 3,318,957 + hybC NIAGMN_16785 0.33 -1.6 3,319,045 + hybC NIAGMN_16785 0.39 +1.4 3,319,046 - hybC NIAGMN_16785 0.39 -1.6 3,319,046 - hybC NIAGMN_16785 0.39 -0.2 3,319,110 + hybC NIAGMN_16785 0.42 -0.7 3,319,110 + hybC NIAGMN_16785 0.42 -0.4 3,319,110 + hybC NIAGMN_16785 0.42 -1.2 3,319,111 - hybC NIAGMN_16785 0.42 -0.0 3,319,111 - hybC NIAGMN_16785 0.42 -0.4 3,319,111 - hybC NIAGMN_16785 0.42 -1.0 3,319,111 - hybC NIAGMN_16785 0.42 +0.2 3,319,111 - hybC NIAGMN_16785 0.42 +0.9 3,319,111 - hybC NIAGMN_16785 0.42 -0.6 3,319,111 - hybC NIAGMN_16785 0.42 -0.8 3,319,111 - hybC NIAGMN_16785 0.42 +0.4 3,319,111 - hybC NIAGMN_16785 0.42 +0.4 3,319,159 - hybC NIAGMN_16785 0.45 -0.3 3,319,159 - hybC NIAGMN_16785 0.45 -1.0 3,319,169 + hybC NIAGMN_16785 0.46 +2.0 3,319,170 - hybC NIAGMN_16785 0.46 +0.7 3,319,230 + hybC NIAGMN_16785 0.49 -0.0 3,319,230 + hybC NIAGMN_16785 0.49 +1.0 3,319,231 - hybC NIAGMN_16785 0.50 +0.8 3,319,231 - hybC NIAGMN_16785 0.50 +1.4 3,319,263 - hybC NIAGMN_16785 0.51 +0.7 3,319,293 + hybC NIAGMN_16785 0.53 +0.9 3,319,293 + hybC NIAGMN_16785 0.53 +1.3 3,319,294 - hybC NIAGMN_16785 0.53 -0.8 3,319,320 + hybC NIAGMN_16785 0.55 -0.0 3,319,321 - hybC NIAGMN_16785 0.55 -1.1 3,319,350 + hybC NIAGMN_16785 0.57 +0.2 3,319,350 + hybC NIAGMN_16785 0.57 -0.7 3,319,350 + hybC NIAGMN_16785 0.57 -0.4 3,319,351 - hybC NIAGMN_16785 0.57 +2.0
Or see this region's nucleotide sequence