Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yheO and tusD overlap by 1 nucleotides tusD and tusC overlap by 1 nucleotides tusC and tusB are separated by 7 nucleotides tusB and rpsL are separated by 125 nucleotides rpsL and rpsG are separated by 96 nucleotides
NIAGMN_15070: yheO - Uncharacterized protein YheO, at 3,005,383 to 3,006,105
yheO
NIAGMN_15075: tusD - sulfurtransferase complex subunit TusD, at 3,006,105 to 3,006,491
tusD
NIAGMN_15080: tusC - sulfurtransferase complex subunit TusC, at 3,006,491 to 3,006,850
tusC
NIAGMN_15085: tusB - sulfurtransferase complex subunit TusB, at 3,006,858 to 3,007,145
tusB
NIAGMN_15090: rpsL - 30S ribosomal protein S12, at 3,007,271 to 3,007,645
rpsL
NIAGMN_15095: rpsG - 30S ribosomal protein S7, at 3,007,742 to 3,008,212
rpsG
Position (kb) 3006
3007 Strain fitness (log2 ratio) -1
0
1 at 3005.616 kb on + strand, within yheO at 3005.753 kb on + strand, within yheO at 3006.052 kb on + strand at 3006.857 kb on + strand at 3007.160 kb on + strand at 3007.160 kb on + strand at 3007.163 kb on - strand at 3007.163 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 3,005,616 + yheO NIAGMN_15070 0.32 +1.1 3,005,753 + yheO NIAGMN_15070 0.51 +1.3 3,006,052 + +0.5 3,006,857 + -0.0 3,007,160 + -1.2 3,007,160 + -0.0 3,007,163 - -0.0 3,007,163 - +1.1
Or see this region's nucleotide sequence