Strain Fitness in Escherichia coli ECRC102 around NIAGMN_05100

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_05100 and rhsA are separated by 24 nucleotides NIAGMN_05100: NIAGMN_05100 - Uncharacterized protein YbfC, at 928,265 to 928,807 _05100 NIAGMN_05105: rhsA - RHS element protein, at 928,832 to 933,031 rhsA Position (kb) 928 929Strain fitness (log2 ratio) -1 0 1 2at 927.581 kb on - strandat 927.587 kb on + strandat 928.944 kb on + strandat 929.026 kb on + strandat 929.121 kb on - strandat 929.121 kb on - strandat 929.121 kb on - strandat 929.270 kb on + strand, within rhsAat 929.270 kb on + strand, within rhsAat 929.307 kb on - strand, within rhsAat 929.309 kb on - strand, within rhsAat 929.310 kb on + strand, within rhsAat 929.310 kb on + strand, within rhsAat 929.311 kb on - strand, within rhsA

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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927,581 - -0.5
927,587 + -1.0
928,944 + +0.2
929,026 + -0.8
929,121 - +0.5
929,121 - -0.2
929,121 - -0.7
929,270 + rhsA NIAGMN_05105 0.10 +0.1
929,270 + rhsA NIAGMN_05105 0.10 -0.2
929,307 - rhsA NIAGMN_05105 0.11 -0.3
929,309 - rhsA NIAGMN_05105 0.11 +2.1
929,310 + rhsA NIAGMN_05105 0.11 +1.2
929,310 + rhsA NIAGMN_05105 0.11 -1.5
929,311 - rhsA NIAGMN_05105 0.11 -1.0

Or see this region's nucleotide sequence