Strain Fitness in Escherichia coli ECRC102 around NIAGMN_03065

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntelfA and ssuE are separated by 355 nucleotidesssuE and ssuA overlap by 8 nucleotidesssuA and ssuD overlap by 4 nucleotides NIAGMN_03055: elfA - Fimbrial subunit ElfA, at 526,913 to 527,452 elfA NIAGMN_03060: ssuE - NADPH-dependent FMN reductase, at 527,808 to 528,383 ssuE NIAGMN_03065: ssuA - aliphatic sulfonate ABC transporter substrate-binding protein SsuA, at 528,376 to 529,335 ssuA NIAGMN_03070: ssuD - FMNH2-dependent alkanesulfonate monooxygenase, at 529,332 to 530,477 ssuD Position (kb) 528 529 530Strain fitness (log2 ratio) -2 -1 0 1 2at 527.807 kb on + strandat 527.981 kb on + strand, within ssuEat 528.390 kb on + strandat 528.390 kb on + strandat 528.466 kb on - strandat 528.486 kb on + strand, within ssuAat 528.807 kb on - strand, within ssuAat 528.807 kb on - strand, within ssuAat 528.860 kb on - strand, within ssuAat 528.900 kb on + strand, within ssuAat 528.931 kb on + strand, within ssuAat 529.125 kb on - strand, within ssuAat 529.252 kb on + strandat 529.586 kb on + strand, within ssuDat 529.646 kb on + strand, within ssuDat 529.793 kb on + strand, within ssuDat 530.158 kb on + strand, within ssuDat 530.159 kb on - strand, within ssuDat 530.159 kb on - strand, within ssuD

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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527,807 + +1.1
527,981 + ssuE NIAGMN_03060 0.30 +0.7
528,390 + -0.9
528,390 + +0.1
528,466 - +0.1
528,486 + ssuA NIAGMN_03065 0.11 -0.6
528,807 - ssuA NIAGMN_03065 0.45 -0.0
528,807 - ssuA NIAGMN_03065 0.45 -1.0
528,860 - ssuA NIAGMN_03065 0.50 +0.1
528,900 + ssuA NIAGMN_03065 0.55 +0.7
528,931 + ssuA NIAGMN_03065 0.58 -0.6
529,125 - ssuA NIAGMN_03065 0.78 -0.1
529,252 + -0.7
529,586 + ssuD NIAGMN_03070 0.22 +0.5
529,646 + ssuD NIAGMN_03070 0.27 -0.9
529,793 + ssuD NIAGMN_03070 0.40 +1.7
530,158 + ssuD NIAGMN_03070 0.72 +2.7
530,159 - ssuD NIAGMN_03070 0.72 +1.1
530,159 - ssuD NIAGMN_03070 0.72 -2.0

Or see this region's nucleotide sequence