Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_02670 and NIAGMN_02675 are separated by 255 nucleotides NIAGMN_02675 and NIAGMN_02680 are separated by 159 nucleotides NIAGMN_02680 and NIAGMN_02685 are separated by 220 nucleotides NIAGMN_02685 and NIAGMN_02690 are separated by 1 nucleotides
NIAGMN_02670: NIAGMN_02670 - holin, at 468,418 to 468,624
_02670
NIAGMN_02675: NIAGMN_02675 - hypothetical protein, at 468,880 to 469,152
_02675
NIAGMN_02680: NIAGMN_02680 - lysozyme, at 469,312 to 469,845
_02680
NIAGMN_02685: NIAGMN_02685 - hypothetical protein, at 470,066 to 470,179
_02685
NIAGMN_02690: NIAGMN_02690 - lysis protein, at 470,181 to 470,648
_02690
Position (kb) 469
470 Strain fitness (log2 ratio) -1
0
1
2 at 468.524 kb on + strand, within NIAGMN_02670 at 468.622 kb on + strand at 468.853 kb on + strand at 469.039 kb on - strand, within NIAGMN_02675 at 469.197 kb on - strand at 469.851 kb on + strand at 469.920 kb on - strand at 470.004 kb on - strand at 470.018 kb on - strand at 470.106 kb on + strand, within NIAGMN_02685 at 470.134 kb on + strand, within NIAGMN_02685 at 470.181 kb on - strand at 470.334 kb on - strand, within NIAGMN_02690
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 468,524 + NIAGMN_02670 0.51 +0.8 468,622 + -0.6 468,853 + +0.2 469,039 - NIAGMN_02675 0.58 +1.8 469,197 - +0.3 469,851 + +1.7 469,920 - +2.7 470,004 - +1.0 470,018 - -1.1 470,106 + NIAGMN_02685 0.35 -0.4 470,134 + NIAGMN_02685 0.60 -0.0 470,181 - -0.1 470,334 - NIAGMN_02690 0.33 +1.3
Or see this region's nucleotide sequence