Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cspE and yebO are separated by 824 nucleotides yebO and yobH are separated by 377 nucleotides yobH and kdgR are separated by 143 nucleotides
NIAGMN_01565: cspE - transcription antiterminator/RNA stability regulator CspE, at 284,638 to 284,847
cspE
NIAGMN_01570: yebO - Uncharacterized protein YebO, at 285,672 to 285,959
yebO
NIAGMN_01575: yobH - Uncharacterized protein YobH, at 286,337 to 286,576
yobH
NIAGMN_01580: kdgR - DNA-binding transcriptional regulator KdgR, at 286,720 to 287,511
kdgR
Position (kb) 285
286 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 284.788 kb on - strand, within cspE at 284.836 kb on - strand at 284.888 kb on - strand at 284.888 kb on - strand at 284.888 kb on - strand at 284.888 kb on - strand at 284.892 kb on + strand at 284.893 kb on - strand at 284.893 kb on - strand at 284.893 kb on - strand at 284.893 kb on - strand at 284.893 kb on - strand at 284.893 kb on - strand at 284.897 kb on - strand at 284.897 kb on - strand at 284.929 kb on - strand at 284.929 kb on - strand at 284.931 kb on - strand at 284.931 kb on - strand at 284.931 kb on - strand at 285.004 kb on - strand at 285.004 kb on - strand at 285.046 kb on + strand at 285.054 kb on + strand at 285.134 kb on - strand at 285.158 kb on - strand at 285.191 kb on - strand at 285.217 kb on - strand at 285.217 kb on - strand at 285.217 kb on - strand at 285.217 kb on - strand at 285.549 kb on + strand at 285.696 kb on - strand at 285.696 kb on - strand at 285.781 kb on - strand, within yebO at 285.781 kb on - strand, within yebO at 285.976 kb on - strand at 285.990 kb on - strand at 285.990 kb on - strand at 286.046 kb on - strand at 286.197 kb on - strand at 286.197 kb on - strand at 286.197 kb on - strand at 286.197 kb on - strand at 286.201 kb on + strand at 286.202 kb on - strand at 286.202 kb on - strand at 286.202 kb on - strand at 286.239 kb on + strand at 286.243 kb on + strand at 286.306 kb on + strand at 286.360 kb on + strand at 286.392 kb on + strand, within yobH at 286.460 kb on + strand, within yobH at 286.460 kb on + strand, within yobH at 286.460 kb on + strand, within yobH at 286.615 kb on - strand at 286.621 kb on - strand at 286.713 kb on - strand at 286.713 kb on - strand at 286.713 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 284,788 - cspE NIAGMN_01565 0.71 +1.4 284,836 - +1.2 284,888 - -0.1 284,888 - -1.3 284,888 - +0.4 284,888 - -0.8 284,892 + +1.7 284,893 - -0.5 284,893 - -0.3 284,893 - +2.7 284,893 - +0.7 284,893 - +2.2 284,893 - +0.6 284,897 - -0.9 284,897 - +0.1 284,929 - +0.1 284,929 - -0.0 284,931 - -0.4 284,931 - -0.5 284,931 - -0.3 285,004 - -0.3 285,004 - +0.5 285,046 + -0.8 285,054 + +0.2 285,134 - -0.9 285,158 - -0.6 285,191 - -0.3 285,217 - +0.1 285,217 - +0.7 285,217 - +2.1 285,217 - +0.1 285,549 + -0.6 285,696 - +0.3 285,696 - -2.1 285,781 - yebO NIAGMN_01570 0.38 -0.8 285,781 - yebO NIAGMN_01570 0.38 -0.6 285,976 - +1.1 285,990 - +1.3 285,990 - -0.3 286,046 - -0.3 286,197 - +0.7 286,197 - -0.9 286,197 - +1.1 286,197 - -1.1 286,201 + +1.7 286,202 - -0.3 286,202 - -2.1 286,202 - +1.1 286,239 + -0.5 286,243 + +0.7 286,306 + -0.3 286,360 + +0.1 286,392 + yobH NIAGMN_01575 0.23 -1.2 286,460 + yobH NIAGMN_01575 0.51 +0.5 286,460 + yobH NIAGMN_01575 0.51 +1.7 286,460 + yobH NIAGMN_01575 0.51 +1.7 286,615 - -0.2 286,621 - -2.8 286,713 - -0.7 286,713 - -2.1 286,713 - -0.6
Or see this region's nucleotide sequence