Experiment: Bas14
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt chbR and chbA are separated by 10 nucleotides chbA and chbC are separated by 50 nucleotides chbC and chbB are separated by 84 nucleotides chbB and osmE are separated by 299 nucleotides
NIAGMN_01090: chbR - transcriptional regulator ChbR, at 193,688 to 194,527
chbR
NIAGMN_01095: chbA - PTS N,N'-diacetylchitobiose transporter subunit IIA, at 194,538 to 194,888
chbA
NIAGMN_01100: chbC - PTS N,N'-diacetylchitobiose transporter subunit IIC, at 194,939 to 196,297
chbC
NIAGMN_01105: chbB - PTS N,N'-diacetylchitobiose transporter subunit IIB, at 196,382 to 196,702
chbB
NIAGMN_01110: osmE - osmotically-inducible lipoprotein OsmE, at 197,002 to 197,340
osmE
Position (kb) 194
195
196
197 Strain fitness (log2 ratio) -1
0
1
2 at 194.189 kb on + strand, within chbR at 194.442 kb on + strand, within chbR at 194.443 kb on - strand, within chbR at 194.889 kb on - strand at 194.984 kb on - strand at 195.169 kb on - strand, within chbC at 195.169 kb on - strand, within chbC at 195.728 kb on + strand, within chbC at 195.905 kb on - strand, within chbC at 195.995 kb on - strand, within chbC at 196.038 kb on + strand, within chbC at 196.154 kb on - strand, within chbC at 196.433 kb on + strand, within chbB at 196.517 kb on - strand, within chbB at 196.703 kb on - strand at 196.724 kb on + strand at 197.004 kb on - strand at 197.031 kb on - strand at 197.094 kb on - strand, within osmE at 197.270 kb on + strand, within osmE
Per-strain Table
Position Strand Gene LocusTag Fraction Bas14 remove 194,189 + chbR NIAGMN_01090 0.60 -1.7 194,442 + chbR NIAGMN_01090 0.90 +1.1 194,443 - chbR NIAGMN_01090 0.90 +0.4 194,889 - +0.9 194,984 - -0.8 195,169 - chbC NIAGMN_01100 0.17 +0.8 195,169 - chbC NIAGMN_01100 0.17 -1.1 195,728 + chbC NIAGMN_01100 0.58 -0.3 195,905 - chbC NIAGMN_01100 0.71 +1.1 195,995 - chbC NIAGMN_01100 0.78 +0.7 196,038 + chbC NIAGMN_01100 0.81 +2.4 196,154 - chbC NIAGMN_01100 0.89 -0.6 196,433 + chbB NIAGMN_01105 0.16 +0.3 196,517 - chbB NIAGMN_01105 0.42 -0.3 196,703 - -0.3 196,724 + +0.1 197,004 - -0.4 197,031 - +1.5 197,094 - osmE NIAGMN_01110 0.27 +0.1 197,270 + osmE NIAGMN_01110 0.79 -1.5
Or see this region's nucleotide sequence