Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00960

Experiment: Bas14

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnlpC and btuD are separated by 77 nucleotidesbtuD and btuE overlap by 1 nucleotidesbtuE and btuC are separated by 62 nucleotides NIAGMN_00950: nlpC - putative endopeptidase NlpC, at 167,552 to 168,016 nlpC NIAGMN_00955: btuD - vitamin B12 ABC transporter ATP-binding protein BtuD, at 168,094 to 168,843 btuD NIAGMN_00960: btuE - bifunctional thioredoxin/glutathione peroxidase, at 168,843 to 169,394 btuE NIAGMN_00965: btuC - vitamin B12 ABC transporter permease BtuC, at 169,457 to 170,437 btuC Position (kb) 168 169 170Strain fitness (log2 ratio) -1 0 1at 168.086 kb on + strandat 168.527 kb on - strand, within btuDat 168.730 kb on - strand, within btuDat 169.526 kb on - strandat 169.651 kb on + strand, within btuCat 169.673 kb on - strand, within btuCat 169.761 kb on - strand, within btuCat 169.975 kb on + strand, within btuC

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
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168,086 + -1.1
168,527 - btuD NIAGMN_00955 0.58 -1.6
168,730 - btuD NIAGMN_00955 0.85 -1.1
169,526 - +1.0
169,651 + btuC NIAGMN_00965 0.20 -0.2
169,673 - btuC NIAGMN_00965 0.22 +1.0
169,761 - btuC NIAGMN_00965 0.31 +0.7
169,975 + btuC NIAGMN_00965 0.53 +1.7

Or see this region's nucleotide sequence