Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00685

Experiment: Bas14

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntpurR and punR overlap by 4 nucleotidespunR and punC are separated by 112 nucleotides NIAGMN_00680: purR - HTH-type transcriptional repressor PurR, at 113,126 to 114,151 purR NIAGMN_00685: punR - DNA-binding transcriptional activator PunR, at 114,148 to 115,080 punR NIAGMN_00690: punC - purine nucleoside transporter PunC, at 115,193 to 116,404 punC Position (kb) 114 115 116Strain fitness (log2 ratio) -2 -1 0 1 2at 113.253 kb on + strand, within purRat 113.253 kb on + strand, within purRat 113.258 kb on + strand, within purRat 113.624 kb on + strand, within purRat 113.624 kb on + strand, within purRat 114.049 kb on + strandat 114.049 kb on + strandat 114.051 kb on + strandat 114.051 kb on + strandat 114.149 kb on + strandat 114.196 kb on - strandat 114.333 kb on + strand, within punRat 114.377 kb on - strand, within punRat 114.457 kb on - strand, within punRat 114.462 kb on + strand, within punRat 114.463 kb on - strand, within punRat 114.467 kb on - strand, within punRat 114.584 kb on - strand, within punRat 114.976 kb on - strand, within punRat 115.118 kb on - strandat 115.136 kb on + strandat 115.189 kb on - strandat 115.190 kb on + strandat 115.190 kb on + strandat 115.266 kb on - strandat 115.333 kb on + strand, within punCat 115.334 kb on - strand, within punCat 115.759 kb on + strand, within punCat 115.826 kb on + strand, within punC

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas14
remove
113,253 + purR NIAGMN_00680 0.12 +2.1
113,253 + purR NIAGMN_00680 0.12 -0.3
113,258 + purR NIAGMN_00680 0.13 +0.1
113,624 + purR NIAGMN_00680 0.49 -0.5
113,624 + purR NIAGMN_00680 0.49 -0.0
114,049 + +0.2
114,049 + -0.3
114,051 + +1.5
114,051 + -0.1
114,149 + -0.3
114,196 - +0.7
114,333 + punR NIAGMN_00685 0.20 +2.0
114,377 - punR NIAGMN_00685 0.25 +0.1
114,457 - punR NIAGMN_00685 0.33 +2.3
114,462 + punR NIAGMN_00685 0.34 -0.6
114,463 - punR NIAGMN_00685 0.34 +1.7
114,467 - punR NIAGMN_00685 0.34 -1.1
114,584 - punR NIAGMN_00685 0.47 +1.3
114,976 - punR NIAGMN_00685 0.89 +0.7
115,118 - +2.1
115,136 + +0.4
115,189 - +1.7
115,190 + +2.2
115,190 + -0.6
115,266 - -1.8
115,333 + punC NIAGMN_00690 0.12 +2.1
115,334 - punC NIAGMN_00690 0.12 +0.7
115,759 + punC NIAGMN_00690 0.47 +0.1
115,826 + punC NIAGMN_00690 0.52 +0.7

Or see this region's nucleotide sequence