Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00231

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_00229 and MPMX26_00230 are separated by 106 nucleotidesMPMX26_00230 and MPMX26_00231 are separated by 69 nucleotidesMPMX26_00231 and MPMX26_00232 are separated by 148 nucleotidesMPMX26_00232 and MPMX26_00233 are separated by 227 nucleotides MPMX26_00229: MPMX26_00229 - hypothetical protein, at 248,865 to 249,662 _00229 MPMX26_00230: MPMX26_00230 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 249,769 to 250,356 _00230 MPMX26_00231: MPMX26_00231 - Putative multidrug export ATP-binding/permease protein, at 250,426 to 252,228 _00231 MPMX26_00232: MPMX26_00232 - hypothetical protein, at 252,377 to 252,991 _00232 MPMX26_00233: MPMX26_00233 - HTH-type transcriptional regulator KipR, at 253,219 to 253,989 _00233 Position (kb) 250 251 252 253Strain fitness (log2 ratio) -1 0 1at 249.494 kb on + strand, within MPMX26_00229at 249.651 kb on + strandat 250.340 kb on + strandat 250.340 kb on + strandat 250.340 kb on + strandat 250.350 kb on + strandat 250.350 kb on + strandat 250.351 kb on + strandat 250.351 kb on + strandat 250.351 kb on + strandat 250.622 kb on - strand, within MPMX26_00231at 250.649 kb on - strand, within MPMX26_00231at 250.662 kb on + strand, within MPMX26_00231at 250.670 kb on - strand, within MPMX26_00231at 250.706 kb on - strand, within MPMX26_00231at 250.800 kb on + strand, within MPMX26_00231at 250.853 kb on - strand, within MPMX26_00231at 250.886 kb on - strand, within MPMX26_00231at 250.897 kb on - strand, within MPMX26_00231at 251.028 kb on - strand, within MPMX26_00231at 251.028 kb on - strand, within MPMX26_00231at 251.113 kb on - strand, within MPMX26_00231at 251.125 kb on - strand, within MPMX26_00231at 251.218 kb on - strand, within MPMX26_00231at 251.364 kb on - strand, within MPMX26_00231at 251.383 kb on - strand, within MPMX26_00231at 251.437 kb on - strand, within MPMX26_00231at 251.527 kb on - strand, within MPMX26_00231at 251.527 kb on - strand, within MPMX26_00231at 251.645 kb on + strand, within MPMX26_00231at 251.928 kb on - strand, within MPMX26_00231at 251.928 kb on - strand, within MPMX26_00231at 252.045 kb on - strand, within MPMX26_00231at 252.086 kb on - strandat 252.164 kb on - strandat 252.164 kb on - strandat 252.349 kb on + strandat 252.349 kb on + strandat 252.354 kb on + strandat 252.374 kb on + strandat 252.503 kb on + strand, within MPMX26_00232at 252.539 kb on + strand, within MPMX26_00232at 252.680 kb on + strand, within MPMX26_00232at 252.686 kb on + strand, within MPMX26_00232at 252.688 kb on + strand, within MPMX26_00232at 252.741 kb on + strand, within MPMX26_00232at 252.741 kb on + strand, within MPMX26_00232at 252.795 kb on + strand, within MPMX26_00232at 252.795 kb on + strand, within MPMX26_00232at 252.854 kb on + strand, within MPMX26_00232at 252.937 kb on + strandat 252.941 kb on + strandat 252.951 kb on + strandat 253.003 kb on + strandat 253.030 kb on + strandat 253.044 kb on - strandat 253.062 kb on - strandat 253.062 kb on - strandat 253.067 kb on - strandat 253.100 kb on - strandat 253.220 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
249,494 + MPMX26_00229 0.79 -0.1
249,651 + +0.8
250,340 + -1.7
250,340 + +0.4
250,340 + +1.5
250,350 + +1.3
250,350 + +0.0
250,351 + -0.2
250,351 + -0.1
250,351 + +0.1
250,622 - MPMX26_00231 0.11 +0.0
250,649 - MPMX26_00231 0.12 +0.2
250,662 + MPMX26_00231 0.13 +1.1
250,670 - MPMX26_00231 0.14 +0.2
250,706 - MPMX26_00231 0.16 -0.0
250,800 + MPMX26_00231 0.21 +0.5
250,853 - MPMX26_00231 0.24 -0.8
250,886 - MPMX26_00231 0.26 -0.8
250,897 - MPMX26_00231 0.26 +0.5
251,028 - MPMX26_00231 0.33 +0.2
251,028 - MPMX26_00231 0.33 -1.3
251,113 - MPMX26_00231 0.38 -1.3
251,125 - MPMX26_00231 0.39 +0.5
251,218 - MPMX26_00231 0.44 -0.5
251,364 - MPMX26_00231 0.52 -0.9
251,383 - MPMX26_00231 0.53 -0.0
251,437 - MPMX26_00231 0.56 -0.8
251,527 - MPMX26_00231 0.61 -0.2
251,527 - MPMX26_00231 0.61 +1.2
251,645 + MPMX26_00231 0.68 -0.9
251,928 - MPMX26_00231 0.83 -0.7
251,928 - MPMX26_00231 0.83 -0.3
252,045 - MPMX26_00231 0.90 -0.4
252,086 - -1.5
252,164 - +0.4
252,164 - +0.5
252,349 + +0.2
252,349 + +0.2
252,354 + +1.2
252,374 + -0.2
252,503 + MPMX26_00232 0.20 +0.4
252,539 + MPMX26_00232 0.26 +0.2
252,680 + MPMX26_00232 0.49 +1.0
252,686 + MPMX26_00232 0.50 +0.1
252,688 + MPMX26_00232 0.51 +0.2
252,741 + MPMX26_00232 0.59 -1.5
252,741 + MPMX26_00232 0.59 -1.6
252,795 + MPMX26_00232 0.68 +0.2
252,795 + MPMX26_00232 0.68 +0.2
252,854 + MPMX26_00232 0.78 +0.5
252,937 + +0.8
252,941 + -0.8
252,951 + -0.1
253,003 + +0.6
253,030 + +0.3
253,044 - -0.1
253,062 - -0.2
253,062 - +0.0
253,067 - +0.1
253,100 - +0.3
253,220 - -0.2

Or see this region's nucleotide sequence