Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF969 and GFF970 are separated by 51 nucleotides GFF970 and GFF971 are separated by 11 nucleotides GFF971 and GFF972 are separated by 30 nucleotides
GFF969 - Enoyl-CoA hydratase (EC 4.2.1.17), at 706,270 to 707,073
GFF969
GFF970 - MaoC-like dehydratase, at 707,125 to 707,982
GFF970
GFF971 - Short-chain dehydrogenase/reductase SDR, at 707,994 to 708,914
GFF971
GFF972 - Thiolase precursor, at 708,945 to 710,102
GFF972
Position (kb) 707
708
709 Strain fitness (log2 ratio) -2
-1
0
1 at 707.066 kb on + strand at 707.067 kb on - strand at 707.336 kb on + strand, within GFF970 at 707.336 kb on + strand, within GFF970 at 707.337 kb on - strand, within GFF970 at 707.337 kb on - strand, within GFF970 at 707.415 kb on - strand, within GFF970 at 707.433 kb on - strand, within GFF970 at 707.621 kb on + strand, within GFF970 at 707.792 kb on + strand, within GFF970 at 707.840 kb on + strand, within GFF970 at 707.841 kb on - strand, within GFF970 at 707.841 kb on - strand, within GFF970 at 707.900 kb on + strand at 707.901 kb on - strand at 707.901 kb on - strand at 707.924 kb on + strand at 707.970 kb on - strand at 708.240 kb on - strand, within GFF971 at 708.352 kb on + strand, within GFF971 at 708.353 kb on - strand, within GFF971 at 708.415 kb on + strand, within GFF971 at 708.415 kb on + strand, within GFF971 at 708.470 kb on - strand, within GFF971 at 708.470 kb on - strand, within GFF971 at 708.470 kb on - strand, within GFF971 at 708.470 kb on - strand, within GFF971 at 709.035 kb on + strand at 709.099 kb on + strand, within GFF972 at 709.099 kb on + strand, within GFF972 at 709.099 kb on + strand, within GFF972 at 709.100 kb on - strand, within GFF972 at 709.100 kb on - strand, within GFF972 at 709.100 kb on - strand, within GFF972 at 709.139 kb on + strand, within GFF972 at 709.261 kb on + strand, within GFF972 at 709.262 kb on - strand, within GFF972 at 709.262 kb on - strand, within GFF972 at 709.398 kb on + strand, within GFF972 at 709.399 kb on - strand, within GFF972 at 709.399 kb on - strand, within GFF972 at 709.405 kb on + strand, within GFF972 at 709.405 kb on + strand, within GFF972 at 709.636 kb on + strand, within GFF972 at 709.670 kb on - strand, within GFF972 at 709.697 kb on - strand, within GFF972 at 709.697 kb on - strand, within GFF972 at 709.708 kb on + strand, within GFF972 at 709.708 kb on + strand, within GFF972 at 709.709 kb on - strand, within GFF972 at 709.709 kb on - strand, within GFF972 at 709.709 kb on - strand, within GFF972 at 709.837 kb on + strand, within GFF972 at 709.837 kb on + strand, within GFF972 at 709.837 kb on + strand, within GFF972 at 709.837 kb on + strand, within GFF972 at 709.837 kb on + strand, within GFF972 at 709.838 kb on - strand, within GFF972 at 709.838 kb on - strand, within GFF972 at 709.838 kb on - strand, within GFF972 at 709.891 kb on + strand, within GFF972
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 707,066 + -0.1 707,067 - -0.8 707,336 + GFF970 0.25 -0.1 707,336 + GFF970 0.25 +0.3 707,337 - GFF970 0.25 -0.9 707,337 - GFF970 0.25 +0.0 707,415 - GFF970 0.34 +0.2 707,433 - GFF970 0.36 -2.0 707,621 + GFF970 0.58 -0.1 707,792 + GFF970 0.78 -0.6 707,840 + GFF970 0.83 +0.2 707,841 - GFF970 0.83 +0.2 707,841 - GFF970 0.83 -0.6 707,900 + +0.4 707,901 - -0.2 707,901 - -0.1 707,924 + -0.6 707,970 - -0.5 708,240 - GFF971 0.27 -0.1 708,352 + GFF971 0.39 +0.0 708,353 - GFF971 0.39 -0.9 708,415 + GFF971 0.46 +0.1 708,415 + GFF971 0.46 -0.2 708,470 - GFF971 0.52 -0.0 708,470 - GFF971 0.52 -0.2 708,470 - GFF971 0.52 -0.9 708,470 - GFF971 0.52 +0.8 709,035 + -0.6 709,099 + GFF972 0.13 -0.3 709,099 + GFF972 0.13 +0.7 709,099 + GFF972 0.13 -0.2 709,100 - GFF972 0.13 +1.0 709,100 - GFF972 0.13 -0.1 709,100 - GFF972 0.13 -0.2 709,139 + GFF972 0.17 +0.3 709,261 + GFF972 0.27 -0.3 709,262 - GFF972 0.27 +0.1 709,262 - GFF972 0.27 +0.1 709,398 + GFF972 0.39 -0.9 709,399 - GFF972 0.39 +0.3 709,399 - GFF972 0.39 +0.2 709,405 + GFF972 0.40 +0.0 709,405 + GFF972 0.40 -1.7 709,636 + GFF972 0.60 +0.0 709,670 - GFF972 0.63 -0.5 709,697 - GFF972 0.65 -0.1 709,697 - GFF972 0.65 -0.1 709,708 + GFF972 0.66 -0.7 709,708 + GFF972 0.66 +0.1 709,709 - GFF972 0.66 -0.5 709,709 - GFF972 0.66 -0.8 709,709 - GFF972 0.66 +0.2 709,837 + GFF972 0.77 +0.2 709,837 + GFF972 0.77 -0.9 709,837 + GFF972 0.77 +0.1 709,837 + GFF972 0.77 -1.7 709,837 + GFF972 0.77 -0.3 709,838 - GFF972 0.77 -0.7 709,838 - GFF972 0.77 -1.0 709,838 - GFF972 0.77 +0.2 709,891 + GFF972 0.82 +0.1
Or see this region's nucleotide sequence