Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF904 and GFF905 are separated by 156 nucleotides GFF905 and GFF906 overlap by 4 nucleotides GFF906 and GFF907 are separated by 26 nucleotides
GFF904 - Mobile element protein, at 634,714 to 634,917
GFF904
GFF905 - hypothetical protein, at 635,074 to 635,505
GFF905
GFF906 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16), at 635,502 to 636,704
GFF906
GFF907 - 2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58), at 636,731 to 638,368
GFF907
Position (kb) 635
636
637 Strain fitness (log2 ratio) -2
-1
0
1
2 at 634.503 kb on + strand at 634.504 kb on - strand at 634.504 kb on - strand at 634.510 kb on + strand at 634.510 kb on + strand at 634.510 kb on + strand at 634.511 kb on - strand at 634.511 kb on - strand at 634.511 kb on - strand at 634.511 kb on - strand at 634.511 kb on - strand at 634.542 kb on + strand at 634.626 kb on + strand at 634.627 kb on - strand at 634.627 kb on - strand at 634.631 kb on + strand at 634.648 kb on - strand at 634.730 kb on + strand at 634.730 kb on + strand at 634.730 kb on + strand at 634.730 kb on + strand at 634.730 kb on + strand at 634.731 kb on - strand at 634.795 kb on + strand, within GFF904 at 634.795 kb on + strand, within GFF904 at 634.809 kb on + strand, within GFF904 at 634.809 kb on + strand, within GFF904 at 634.809 kb on + strand, within GFF904 at 634.809 kb on + strand, within GFF904 at 634.810 kb on - strand, within GFF904 at 634.981 kb on + strand at 634.982 kb on - strand at 635.224 kb on + strand, within GFF905 at 635.297 kb on + strand, within GFF905 at 635.297 kb on + strand, within GFF905 at 635.373 kb on - strand, within GFF905 at 635.638 kb on + strand, within GFF906 at 635.638 kb on + strand, within GFF906 at 635.638 kb on + strand, within GFF906 at 635.722 kb on + strand, within GFF906 at 635.723 kb on - strand, within GFF906 at 635.821 kb on + strand, within GFF906 at 635.822 kb on - strand, within GFF906 at 635.822 kb on - strand, within GFF906 at 635.822 kb on - strand, within GFF906 at 635.822 kb on - strand, within GFF906 at 635.869 kb on + strand, within GFF906 at 635.870 kb on - strand, within GFF906 at 635.870 kb on - strand, within GFF906 at 635.942 kb on - strand, within GFF906 at 635.965 kb on + strand, within GFF906 at 635.965 kb on + strand, within GFF906 at 635.965 kb on + strand, within GFF906 at 635.965 kb on + strand, within GFF906 at 635.965 kb on + strand, within GFF906 at 635.966 kb on - strand, within GFF906 at 635.966 kb on - strand, within GFF906 at 636.064 kb on + strand, within GFF906 at 636.064 kb on + strand, within GFF906 at 636.065 kb on - strand, within GFF906 at 636.466 kb on + strand, within GFF906 at 636.466 kb on + strand, within GFF906 at 636.466 kb on + strand, within GFF906 at 636.467 kb on - strand, within GFF906 at 636.467 kb on - strand, within GFF906 at 636.813 kb on + strand at 636.814 kb on - strand at 636.838 kb on - strand at 636.838 kb on - strand at 636.922 kb on + strand, within GFF907 at 636.923 kb on - strand, within GFF907 at 637.021 kb on + strand, within GFF907 at 637.142 kb on + strand, within GFF907 at 637.165 kb on - strand, within GFF907 at 637.165 kb on - strand, within GFF907 at 637.195 kb on - strand, within GFF907 at 637.263 kb on - strand, within GFF907
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 634,503 + +0.8 634,504 - -0.9 634,504 - +0.3 634,510 + +0.2 634,510 + +0.6 634,510 + -0.1 634,511 - +0.1 634,511 - +0.0 634,511 - -0.0 634,511 - -0.4 634,511 - -1.7 634,542 + -0.5 634,626 + -0.1 634,627 - +0.3 634,627 - +0.5 634,631 + -0.4 634,648 - -0.3 634,730 + -0.3 634,730 + -0.8 634,730 + -0.3 634,730 + +0.1 634,730 + -0.2 634,731 - -0.2 634,795 + GFF904 0.40 +1.1 634,795 + GFF904 0.40 -0.2 634,809 + GFF904 0.47 -1.3 634,809 + GFF904 0.47 -0.3 634,809 + GFF904 0.47 +2.1 634,809 + GFF904 0.47 -0.2 634,810 - GFF904 0.47 +0.4 634,981 + +0.1 634,982 - -1.0 635,224 + GFF905 0.35 -0.1 635,297 + GFF905 0.52 +0.2 635,297 + GFF905 0.52 -0.2 635,373 - GFF905 0.69 +0.4 635,638 + GFF906 0.11 +0.5 635,638 + GFF906 0.11 +1.7 635,638 + GFF906 0.11 +0.2 635,722 + GFF906 0.18 +0.3 635,723 - GFF906 0.18 +0.2 635,821 + GFF906 0.27 -0.1 635,822 - GFF906 0.27 +0.2 635,822 - GFF906 0.27 -0.9 635,822 - GFF906 0.27 +0.4 635,822 - GFF906 0.27 +0.0 635,869 + GFF906 0.31 -1.0 635,870 - GFF906 0.31 +0.8 635,870 - GFF906 0.31 +0.3 635,942 - GFF906 0.37 +0.4 635,965 + GFF906 0.38 -0.3 635,965 + GFF906 0.38 +0.5 635,965 + GFF906 0.38 +0.1 635,965 + GFF906 0.38 -0.0 635,965 + GFF906 0.38 +0.6 635,966 - GFF906 0.39 -0.3 635,966 - GFF906 0.39 +0.3 636,064 + GFF906 0.47 -0.5 636,064 + GFF906 0.47 +0.1 636,065 - GFF906 0.47 +0.5 636,466 + GFF906 0.80 -2.4 636,466 + GFF906 0.80 +0.3 636,466 + GFF906 0.80 -0.3 636,467 - GFF906 0.80 +0.5 636,467 - GFF906 0.80 +0.7 636,813 + -1.1 636,814 - +1.1 636,838 - -0.2 636,838 - +0.8 636,922 + GFF907 0.12 +0.3 636,923 - GFF907 0.12 -0.3 637,021 + GFF907 0.18 +0.7 637,142 + GFF907 0.25 -0.9 637,165 - GFF907 0.26 +0.5 637,165 - GFF907 0.26 -0.6 637,195 - GFF907 0.28 +0.0 637,263 - GFF907 0.32 +0.5
Or see this region's nucleotide sequence