Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF895 and GFF896 are separated by 402 nucleotides GFF896 and GFF897 are separated by 156 nucleotides
GFF895 - Mobile element protein, at 622,940 to 623,956
GFF895
GFF896 - Response regulator of zinc sigma-54-dependent two-component system, at 624,359 to 626,038
GFF896
GFF897 - Tricarboxylate transport protein TctC, at 626,195 to 627,160
GFF897
Position (kb) 624
625
626
627 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 623.366 kb on + strand, within GFF895 at 623.366 kb on + strand, within GFF895 at 623.366 kb on + strand, within GFF895 at 623.366 kb on + strand, within GFF895 at 623.366 kb on + strand, within GFF895 at 623.367 kb on - strand, within GFF895 at 623.367 kb on - strand, within GFF895 at 623.367 kb on - strand, within GFF895 at 623.367 kb on - strand, within GFF895 at 623.367 kb on - strand, within GFF895 at 623.367 kb on - strand, within GFF895 at 623.367 kb on - strand, within GFF895 at 623.486 kb on + strand, within GFF895 at 623.487 kb on - strand, within GFF895 at 623.487 kb on - strand, within GFF895 at 623.487 kb on - strand, within GFF895 at 623.596 kb on - strand, within GFF895 at 623.596 kb on - strand, within GFF895 at 623.596 kb on - strand, within GFF895 at 623.737 kb on + strand, within GFF895 at 623.738 kb on - strand, within GFF895 at 623.738 kb on - strand, within GFF895 at 623.738 kb on - strand, within GFF895 at 623.738 kb on - strand, within GFF895 at 623.738 kb on - strand, within GFF895 at 623.753 kb on + strand, within GFF895 at 623.753 kb on + strand, within GFF895 at 623.753 kb on + strand, within GFF895 at 623.753 kb on + strand, within GFF895 at 623.753 kb on + strand, within GFF895 at 623.753 kb on + strand, within GFF895 at 623.753 kb on + strand, within GFF895 at 623.754 kb on - strand, within GFF895 at 623.754 kb on - strand, within GFF895 at 623.843 kb on - strand, within GFF895 at 623.843 kb on - strand, within GFF895 at 623.924 kb on + strand at 623.924 kb on + strand at 623.925 kb on - strand at 623.925 kb on - strand at 623.925 kb on - strand at 623.925 kb on - strand at 623.925 kb on - strand at 624.016 kb on + strand at 624.016 kb on + strand at 624.016 kb on + strand at 624.017 kb on - strand at 624.017 kb on - strand at 624.017 kb on - strand at 624.035 kb on + strand at 624.035 kb on + strand at 624.035 kb on + strand at 624.036 kb on - strand at 624.036 kb on - strand at 624.036 kb on - strand at 624.147 kb on - strand at 624.147 kb on - strand at 624.147 kb on - strand at 624.147 kb on - strand at 624.147 kb on - strand at 624.148 kb on + strand at 624.148 kb on + strand at 624.148 kb on + strand at 624.148 kb on + strand at 624.148 kb on + strand at 624.148 kb on + strand at 624.148 kb on + strand at 624.148 kb on + strand at 624.148 kb on + strand at 624.149 kb on - strand at 624.149 kb on - strand at 624.149 kb on - strand at 624.149 kb on - strand at 624.149 kb on - strand at 624.149 kb on - strand at 624.149 kb on - strand at 624.149 kb on - strand at 624.149 kb on - strand at 624.149 kb on - strand at 624.168 kb on - strand at 624.168 kb on - strand at 624.209 kb on + strand at 624.209 kb on + strand at 624.210 kb on - strand at 624.210 kb on - strand at 624.210 kb on - strand at 624.210 kb on - strand at 624.210 kb on - strand at 624.210 kb on - strand at 624.210 kb on - strand at 624.210 kb on - strand at 624.211 kb on + strand at 624.211 kb on + strand at 624.211 kb on + strand at 624.211 kb on + strand at 624.211 kb on + strand at 624.211 kb on + strand at 624.212 kb on - strand at 624.212 kb on - strand at 624.212 kb on - strand at 624.212 kb on - strand at 624.212 kb on - strand at 624.212 kb on - strand at 624.212 kb on - strand at 624.212 kb on - strand at 624.212 kb on - strand at 624.212 kb on - strand at 624.224 kb on - strand at 624.224 kb on - strand at 624.284 kb on + strand at 624.292 kb on + strand at 624.443 kb on + strand at 624.443 kb on + strand at 624.443 kb on - strand at 624.456 kb on - strand at 624.706 kb on + strand, within GFF896 at 624.730 kb on + strand, within GFF896 at 624.730 kb on + strand, within GFF896 at 624.730 kb on + strand, within GFF896 at 624.730 kb on + strand, within GFF896 at 624.730 kb on + strand, within GFF896 at 624.730 kb on + strand, within GFF896 at 624.730 kb on + strand, within GFF896 at 624.730 kb on + strand, within GFF896 at 624.731 kb on - strand, within GFF896 at 624.731 kb on - strand, within GFF896 at 624.731 kb on - strand, within GFF896 at 624.731 kb on - strand, within GFF896 at 624.731 kb on - strand, within GFF896 at 624.731 kb on - strand, within GFF896 at 624.810 kb on + strand, within GFF896 at 624.811 kb on - strand, within GFF896 at 624.811 kb on - strand, within GFF896 at 624.930 kb on + strand, within GFF896 at 624.930 kb on + strand, within GFF896 at 624.930 kb on + strand, within GFF896 at 624.930 kb on + strand, within GFF896 at 624.930 kb on + strand, within GFF896 at 624.931 kb on - strand, within GFF896 at 624.931 kb on - strand, within GFF896 at 624.931 kb on - strand, within GFF896 at 625.342 kb on - strand, within GFF896 at 625.371 kb on - strand, within GFF896 at 625.371 kb on - strand, within GFF896 at 625.380 kb on + strand, within GFF896 at 625.380 kb on + strand, within GFF896 at 625.380 kb on + strand, within GFF896 at 625.380 kb on + strand, within GFF896 at 625.380 kb on + strand, within GFF896 at 625.381 kb on - strand, within GFF896 at 625.500 kb on + strand, within GFF896 at 625.500 kb on + strand, within GFF896 at 625.501 kb on - strand, within GFF896 at 625.501 kb on - strand, within GFF896 at 625.501 kb on - strand, within GFF896 at 625.501 kb on - strand, within GFF896 at 625.501 kb on - strand, within GFF896 at 625.501 kb on - strand, within GFF896 at 625.501 kb on - strand, within GFF896 at 625.635 kb on + strand, within GFF896 at 625.635 kb on + strand, within GFF896 at 625.635 kb on + strand, within GFF896 at 625.635 kb on + strand, within GFF896 at 625.635 kb on + strand, within GFF896 at 625.635 kb on + strand, within GFF896 at 625.635 kb on + strand, within GFF896 at 625.636 kb on - strand, within GFF896 at 625.636 kb on - strand, within GFF896 at 625.693 kb on + strand, within GFF896 at 625.693 kb on + strand, within GFF896 at 625.693 kb on + strand, within GFF896 at 625.694 kb on - strand, within GFF896 at 625.694 kb on - strand, within GFF896 at 625.694 kb on - strand, within GFF896 at 625.694 kb on - strand, within GFF896 at 625.731 kb on - strand, within GFF896 at 625.731 kb on - strand, within GFF896 at 625.731 kb on - strand, within GFF896 at 625.731 kb on - strand, within GFF896 at 625.778 kb on + strand, within GFF896 at 625.778 kb on + strand, within GFF896 at 625.778 kb on + strand, within GFF896 at 625.778 kb on + strand, within GFF896 at 625.779 kb on - strand, within GFF896 at 625.779 kb on - strand, within GFF896 at 625.779 kb on - strand, within GFF896 at 625.779 kb on - strand, within GFF896 at 626.038 kb on + strand at 626.039 kb on + strand at 626.039 kb on - strand at 626.039 kb on - strand at 626.061 kb on + strand at 626.061 kb on + strand at 626.061 kb on + strand at 626.062 kb on - strand at 626.119 kb on + strand at 626.119 kb on + strand at 626.119 kb on + strand at 626.119 kb on + strand at 626.119 kb on + strand at 626.119 kb on + strand at 626.119 kb on + strand at 626.119 kb on + strand at 626.119 kb on + strand at 626.119 kb on + strand at 626.119 kb on + strand at 626.119 kb on + strand at 626.119 kb on + strand at 626.120 kb on - strand at 626.120 kb on - strand at 626.120 kb on - strand at 626.120 kb on - strand at 626.120 kb on - strand at 626.120 kb on - strand at 626.120 kb on - strand at 626.120 kb on - strand at 626.120 kb on - strand at 626.120 kb on - strand at 626.120 kb on - strand at 626.120 kb on - strand at 626.120 kb on - strand at 626.169 kb on + strand at 626.169 kb on + strand at 626.170 kb on - strand at 626.170 kb on - strand at 626.193 kb on + strand at 626.194 kb on + strand at 626.194 kb on + strand at 626.194 kb on + strand at 626.195 kb on - strand at 626.195 kb on - strand at 626.195 kb on - strand at 626.195 kb on - strand at 626.195 kb on - strand at 626.195 kb on - strand at 626.195 kb on - strand at 626.195 kb on - strand at 626.196 kb on - strand at 626.303 kb on + strand, within GFF897 at 626.303 kb on + strand, within GFF897 at 626.303 kb on + strand, within GFF897 at 626.304 kb on - strand, within GFF897 at 626.436 kb on + strand, within GFF897 at 626.436 kb on + strand, within GFF897 at 626.558 kb on + strand, within GFF897 at 626.558 kb on + strand, within GFF897 at 626.558 kb on + strand, within GFF897 at 626.559 kb on - strand, within GFF897 at 626.559 kb on - strand, within GFF897 at 626.610 kb on - strand, within GFF897 at 626.647 kb on + strand, within GFF897 at 626.647 kb on + strand, within GFF897 at 626.647 kb on + strand, within GFF897 at 626.647 kb on + strand, within GFF897 at 626.647 kb on + strand, within GFF897 at 626.647 kb on + strand, within GFF897 at 626.648 kb on - strand, within GFF897 at 626.648 kb on - strand, within GFF897 at 626.648 kb on - strand, within GFF897 at 626.648 kb on - strand, within GFF897 at 626.651 kb on + strand, within GFF897 at 626.651 kb on + strand, within GFF897 at 626.651 kb on + strand, within GFF897 at 626.651 kb on + strand, within GFF897 at 626.651 kb on + strand, within GFF897 at 626.651 kb on + strand, within GFF897 at 626.651 kb on + strand, within GFF897 at 626.652 kb on - strand, within GFF897 at 626.652 kb on - strand, within GFF897 at 626.652 kb on - strand, within GFF897 at 626.652 kb on - strand, within GFF897 at 626.652 kb on - strand, within GFF897 at 626.652 kb on - strand, within GFF897 at 626.928 kb on - strand, within GFF897 at 626.928 kb on - strand, within GFF897 at 626.928 kb on - strand, within GFF897 at 626.928 kb on - strand, within GFF897 at 626.962 kb on + strand, within GFF897 at 626.962 kb on + strand, within GFF897 at 626.963 kb on - strand, within GFF897 at 626.963 kb on - strand, within GFF897 at 626.963 kb on - strand, within GFF897 at 626.963 kb on - strand, within GFF897 at 626.963 kb on - strand, within GFF897
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 623,366 + GFF895 0.42 -0.7 623,366 + GFF895 0.42 +0.7 623,366 + GFF895 0.42 -0.7 623,366 + GFF895 0.42 -0.8 623,366 + GFF895 0.42 -0.1 623,367 - GFF895 0.42 +0.3 623,367 - GFF895 0.42 -0.2 623,367 - GFF895 0.42 -0.5 623,367 - GFF895 0.42 -0.1 623,367 - GFF895 0.42 -1.0 623,367 - GFF895 0.42 +0.0 623,367 - GFF895 0.42 -1.5 623,486 + GFF895 0.54 +1.0 623,487 - GFF895 0.54 -0.2 623,487 - GFF895 0.54 -0.5 623,487 - GFF895 0.54 +0.5 623,596 - GFF895 0.65 -0.1 623,596 - GFF895 0.65 +0.4 623,596 - GFF895 0.65 -0.3 623,737 + GFF895 0.78 -0.7 623,738 - GFF895 0.78 -0.6 623,738 - GFF895 0.78 -1.3 623,738 - GFF895 0.78 +0.1 623,738 - GFF895 0.78 +0.8 623,738 - GFF895 0.78 -0.2 623,753 + GFF895 0.80 -3.0 623,753 + GFF895 0.80 -0.2 623,753 + GFF895 0.80 -1.6 623,753 + GFF895 0.80 -0.4 623,753 + GFF895 0.80 +0.7 623,753 + GFF895 0.80 -1.3 623,753 + GFF895 0.80 +0.1 623,754 - GFF895 0.80 -2.3 623,754 - GFF895 0.80 +0.1 623,843 - GFF895 0.89 +1.1 623,843 - GFF895 0.89 +0.5 623,924 + -0.9 623,924 + -1.2 623,925 - +0.0 623,925 - -1.1 623,925 - -0.1 623,925 - +0.3 623,925 - -0.3 624,016 + -0.0 624,016 + -0.5 624,016 + +0.2 624,017 - -0.1 624,017 - -0.0 624,017 - -0.2 624,035 + +0.1 624,035 + +1.1 624,035 + -0.2 624,036 - -0.0 624,036 - +0.1 624,036 - +0.3 624,147 - -1.3 624,147 - +0.8 624,147 - -0.5 624,147 - -0.5 624,147 - +0.1 624,148 + +1.3 624,148 + +0.1 624,148 + +0.7 624,148 + -0.2 624,148 + +1.3 624,148 + +0.2 624,148 + -0.9 624,148 + +0.1 624,148 + +0.6 624,149 - +0.5 624,149 - +0.4 624,149 - -0.2 624,149 - -0.1 624,149 - +0.3 624,149 - +0.1 624,149 - +0.1 624,149 - -0.3 624,149 - +1.1 624,149 - +0.6 624,168 - -0.6 624,168 - -0.3 624,209 + -0.5 624,209 + -0.6 624,210 - -0.1 624,210 - -0.1 624,210 - -0.2 624,210 - +0.3 624,210 - -0.2 624,210 - +0.4 624,210 - -1.1 624,210 - -0.3 624,211 + +1.2 624,211 + -0.3 624,211 + +0.5 624,211 + -0.1 624,211 + -0.1 624,211 + +0.1 624,212 - -0.2 624,212 - -0.4 624,212 - +0.7 624,212 - +0.6 624,212 - -0.3 624,212 - -0.3 624,212 - +0.6 624,212 - -0.0 624,212 - -0.2 624,212 - +0.3 624,224 - -1.8 624,224 - +0.2 624,284 + -0.3 624,292 + +0.3 624,443 + +0.3 624,443 + -0.1 624,443 - -1.1 624,456 - -0.4 624,706 + GFF896 0.21 -0.6 624,730 + GFF896 0.22 +0.0 624,730 + GFF896 0.22 -0.0 624,730 + GFF896 0.22 -0.2 624,730 + GFF896 0.22 -1.3 624,730 + GFF896 0.22 -0.3 624,730 + GFF896 0.22 -0.4 624,730 + GFF896 0.22 -0.9 624,730 + GFF896 0.22 +0.9 624,731 - GFF896 0.22 +0.2 624,731 - GFF896 0.22 +0.1 624,731 - GFF896 0.22 -0.3 624,731 - GFF896 0.22 -0.5 624,731 - GFF896 0.22 +0.6 624,731 - GFF896 0.22 +0.2 624,810 + GFF896 0.27 -0.6 624,811 - GFF896 0.27 +0.3 624,811 - GFF896 0.27 -0.1 624,930 + GFF896 0.34 -0.1 624,930 + GFF896 0.34 -0.3 624,930 + GFF896 0.34 -1.3 624,930 + GFF896 0.34 -0.1 624,930 + GFF896 0.34 -1.0 624,931 - GFF896 0.34 -0.3 624,931 - GFF896 0.34 -0.0 624,931 - GFF896 0.34 -1.9 625,342 - GFF896 0.59 -0.1 625,371 - GFF896 0.60 +0.1 625,371 - GFF896 0.60 +0.8 625,380 + GFF896 0.61 -0.4 625,380 + GFF896 0.61 -0.2 625,380 + GFF896 0.61 -0.1 625,380 + GFF896 0.61 -0.5 625,380 + GFF896 0.61 +1.5 625,381 - GFF896 0.61 -0.1 625,500 + GFF896 0.68 +0.1 625,500 + GFF896 0.68 -0.2 625,501 - GFF896 0.68 -0.3 625,501 - GFF896 0.68 -0.5 625,501 - GFF896 0.68 +0.5 625,501 - GFF896 0.68 +0.1 625,501 - GFF896 0.68 -1.9 625,501 - GFF896 0.68 +0.4 625,501 - GFF896 0.68 +1.3 625,635 + GFF896 0.76 +0.2 625,635 + GFF896 0.76 +0.4 625,635 + GFF896 0.76 +0.1 625,635 + GFF896 0.76 -0.5 625,635 + GFF896 0.76 +0.1 625,635 + GFF896 0.76 -0.5 625,635 + GFF896 0.76 +0.6 625,636 - GFF896 0.76 -0.3 625,636 - GFF896 0.76 +0.3 625,693 + GFF896 0.79 +1.1 625,693 + GFF896 0.79 -0.2 625,693 + GFF896 0.79 -0.7 625,694 - GFF896 0.79 +0.6 625,694 - GFF896 0.79 +0.1 625,694 - GFF896 0.79 -0.5 625,694 - GFF896 0.79 -1.1 625,731 - GFF896 0.82 +0.6 625,731 - GFF896 0.82 -0.2 625,731 - GFF896 0.82 +0.6 625,731 - GFF896 0.82 -0.2 625,778 + GFF896 0.84 +0.2 625,778 + GFF896 0.84 +0.7 625,778 + GFF896 0.84 -0.2 625,778 + GFF896 0.84 -0.0 625,779 - GFF896 0.85 -0.2 625,779 - GFF896 0.85 +0.7 625,779 - GFF896 0.85 -0.0 625,779 - GFF896 0.85 -0.7 626,038 + +0.5 626,039 + +0.8 626,039 - -0.0 626,039 - -0.9 626,061 + +0.3 626,061 + +0.2 626,061 + +0.1 626,062 - +0.0 626,119 + +0.8 626,119 + -0.1 626,119 + +0.6 626,119 + +0.5 626,119 + +0.7 626,119 + +0.8 626,119 + +0.1 626,119 + +0.1 626,119 + +0.8 626,119 + +0.5 626,119 + +0.7 626,119 + +0.4 626,119 + +0.2 626,120 - -0.9 626,120 - +1.1 626,120 - -0.1 626,120 - +0.0 626,120 - -0.3 626,120 - -0.2 626,120 - +0.2 626,120 - -1.1 626,120 - -0.4 626,120 - +0.2 626,120 - -0.1 626,120 - -0.0 626,120 - -0.6 626,169 + +0.0 626,169 + +0.6 626,170 - -0.3 626,170 - +1.2 626,193 + -0.1 626,194 + +0.7 626,194 + +0.9 626,194 + -0.2 626,195 - +0.2 626,195 - +0.9 626,195 - -0.1 626,195 - -0.3 626,195 - -0.1 626,195 - -0.1 626,195 - -0.1 626,195 - -0.6 626,196 - +1.3 626,303 + GFF897 0.11 -0.2 626,303 + GFF897 0.11 -0.3 626,303 + GFF897 0.11 +0.1 626,304 - GFF897 0.11 -0.5 626,436 + GFF897 0.25 -0.2 626,436 + GFF897 0.25 -0.9 626,558 + GFF897 0.38 +0.1 626,558 + GFF897 0.38 +0.1 626,558 + GFF897 0.38 -0.1 626,559 - GFF897 0.38 +0.6 626,559 - GFF897 0.38 -0.3 626,610 - GFF897 0.43 +0.5 626,647 + GFF897 0.47 +0.1 626,647 + GFF897 0.47 -1.7 626,647 + GFF897 0.47 +0.2 626,647 + GFF897 0.47 +0.1 626,647 + GFF897 0.47 +0.1 626,647 + GFF897 0.47 -0.1 626,648 - GFF897 0.47 -0.5 626,648 - GFF897 0.47 -0.5 626,648 - GFF897 0.47 +0.1 626,648 - GFF897 0.47 -1.1 626,651 + GFF897 0.47 +0.0 626,651 + GFF897 0.47 -0.1 626,651 + GFF897 0.47 +1.2 626,651 + GFF897 0.47 +0.1 626,651 + GFF897 0.47 -0.5 626,651 + GFF897 0.47 -0.1 626,651 + GFF897 0.47 +0.2 626,652 - GFF897 0.47 -1.1 626,652 - GFF897 0.47 +0.8 626,652 - GFF897 0.47 +0.0 626,652 - GFF897 0.47 -0.3 626,652 - GFF897 0.47 +0.6 626,652 - GFF897 0.47 +1.1 626,928 - GFF897 0.76 +0.1 626,928 - GFF897 0.76 +0.9 626,928 - GFF897 0.76 +0.3 626,928 - GFF897 0.76 +0.6 626,962 + GFF897 0.79 +0.4 626,962 + GFF897 0.79 +0.9 626,963 - GFF897 0.80 +0.1 626,963 - GFF897 0.80 -0.3 626,963 - GFF897 0.80 -0.3 626,963 - GFF897 0.80 +1.0 626,963 - GFF897 0.80 -0.5
Or see this region's nucleotide sequence