Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF797 and GFF798 are separated by 52 nucleotides GFF798 and GFF799 are separated by 19 nucleotides
GFF797 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 492,612 to 493,580
GFF797
GFF798 - Gluconolactonase (EC 3.1.1.17), at 493,633 to 494,535
GFF798
GFF799 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 494,555 to 495,406
GFF799
Position (kb) 493
494
495 Strain fitness (log2 ratio) -1
0
1 at 492.676 kb on + strand at 492.910 kb on + strand, within GFF797 at 492.917 kb on - strand, within GFF797 at 492.953 kb on - strand, within GFF797 at 493.007 kb on - strand, within GFF797 at 493.162 kb on + strand, within GFF797 at 493.163 kb on - strand, within GFF797 at 493.414 kb on + strand, within GFF797 at 493.414 kb on + strand, within GFF797 at 493.414 kb on + strand, within GFF797 at 493.414 kb on + strand, within GFF797 at 493.477 kb on + strand, within GFF797 at 493.836 kb on + strand, within GFF798 at 493.963 kb on - strand, within GFF798 at 494.027 kb on + strand, within GFF798 at 494.027 kb on + strand, within GFF798 at 494.027 kb on + strand, within GFF798 at 494.028 kb on - strand, within GFF798 at 494.028 kb on - strand, within GFF798 at 494.117 kb on + strand, within GFF798 at 494.117 kb on + strand, within GFF798 at 494.118 kb on - strand, within GFF798 at 494.150 kb on + strand, within GFF798 at 494.595 kb on + strand at 494.596 kb on - strand at 494.682 kb on + strand, within GFF799 at 494.905 kb on - strand, within GFF799 at 494.905 kb on - strand, within GFF799 at 494.946 kb on + strand, within GFF799 at 494.947 kb on - strand, within GFF799 at 495.000 kb on + strand, within GFF799 at 495.001 kb on - strand, within GFF799 at 495.001 kb on - strand, within GFF799 at 495.001 kb on - strand, within GFF799 at 495.069 kb on + strand, within GFF799 at 495.069 kb on + strand, within GFF799 at 495.070 kb on - strand, within GFF799 at 495.418 kb on + strand at 495.419 kb on - strand at 495.419 kb on - strand at 495.528 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 492,676 + +0.1 492,910 + GFF797 0.31 -0.1 492,917 - GFF797 0.31 +0.1 492,953 - GFF797 0.35 -0.2 493,007 - GFF797 0.41 -0.7 493,162 + GFF797 0.57 +0.2 493,163 - GFF797 0.57 -0.6 493,414 + GFF797 0.83 +0.0 493,414 + GFF797 0.83 +0.3 493,414 + GFF797 0.83 +0.7 493,414 + GFF797 0.83 +0.1 493,477 + GFF797 0.89 +0.2 493,836 + GFF798 0.22 -1.0 493,963 - GFF798 0.37 -0.5 494,027 + GFF798 0.44 -0.8 494,027 + GFF798 0.44 -1.0 494,027 + GFF798 0.44 -1.3 494,028 - GFF798 0.44 -1.7 494,028 - GFF798 0.44 +0.3 494,117 + GFF798 0.54 +0.9 494,117 + GFF798 0.54 -0.5 494,118 - GFF798 0.54 -0.1 494,150 + GFF798 0.57 +0.3 494,595 + +0.4 494,596 - +0.0 494,682 + GFF799 0.15 -0.4 494,905 - GFF799 0.41 +0.6 494,905 - GFF799 0.41 +0.1 494,946 + GFF799 0.46 -0.7 494,947 - GFF799 0.46 -0.0 495,000 + GFF799 0.52 +0.2 495,001 - GFF799 0.52 -0.7 495,001 - GFF799 0.52 -0.5 495,001 - GFF799 0.52 +0.8 495,069 + GFF799 0.60 -0.0 495,069 + GFF799 0.60 +0.5 495,070 - GFF799 0.60 -1.3 495,418 + +0.4 495,419 - -0.5 495,419 - +0.2 495,528 + +0.3
Or see this region's nucleotide sequence