Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF626 and GFF627 are separated by 2 nucleotides GFF627 and GFF628 are separated by 3 nucleotides
GFF626 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 302,737 to 303,612
GFF626
GFF627 - N-formylglutamate deformylase (EC 3.5.1.68), at 303,615 to 304,478
GFF627
GFF628 - Tricarboxylate transport protein TctC, at 304,482 to 305,462
GFF628
Position (kb) 303
304
305 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 302.672 kb on + strand at 302.673 kb on - strand at 302.673 kb on - strand at 302.860 kb on + strand, within GFF626 at 303.252 kb on + strand, within GFF626 at 303.490 kb on - strand, within GFF626 at 303.491 kb on - strand, within GFF626 at 303.730 kb on + strand, within GFF627 at 303.730 kb on + strand, within GFF627 at 303.730 kb on + strand, within GFF627 at 303.730 kb on + strand, within GFF627 at 303.731 kb on - strand, within GFF627 at 303.731 kb on - strand, within GFF627 at 303.731 kb on - strand, within GFF627 at 303.814 kb on + strand, within GFF627 at 303.815 kb on - strand, within GFF627 at 303.815 kb on - strand, within GFF627 at 303.961 kb on + strand, within GFF627 at 304.063 kb on + strand, within GFF627 at 304.255 kb on + strand, within GFF627 at 304.256 kb on - strand, within GFF627 at 304.256 kb on - strand, within GFF627 at 304.256 kb on - strand, within GFF627 at 304.523 kb on - strand at 304.523 kb on - strand at 304.741 kb on + strand, within GFF628 at 304.815 kb on + strand, within GFF628 at 304.903 kb on + strand, within GFF628 at 304.904 kb on - strand, within GFF628 at 304.904 kb on - strand, within GFF628 at 304.904 kb on - strand, within GFF628 at 304.996 kb on + strand, within GFF628 at 304.997 kb on - strand, within GFF628 at 304.997 kb on - strand, within GFF628 at 304.997 kb on - strand, within GFF628 at 305.129 kb on - strand, within GFF628 at 305.129 kb on - strand, within GFF628 at 305.147 kb on - strand, within GFF628 at 305.197 kb on + strand, within GFF628 at 305.197 kb on + strand, within GFF628 at 305.299 kb on + strand, within GFF628
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 302,672 + -0.2 302,673 - +0.8 302,673 - +0.2 302,860 + GFF626 0.14 +0.1 303,252 + GFF626 0.59 -2.1 303,490 - GFF626 0.86 -0.1 303,491 - GFF626 0.86 +0.2 303,730 + GFF627 0.13 -0.2 303,730 + GFF627 0.13 -1.3 303,730 + GFF627 0.13 -2.8 303,730 + GFF627 0.13 -0.8 303,731 - GFF627 0.13 -0.0 303,731 - GFF627 0.13 -1.0 303,731 - GFF627 0.13 +0.3 303,814 + GFF627 0.23 -1.3 303,815 - GFF627 0.23 -0.2 303,815 - GFF627 0.23 -1.1 303,961 + GFF627 0.40 -0.9 304,063 + GFF627 0.52 -0.9 304,255 + GFF627 0.74 -0.0 304,256 - GFF627 0.74 -1.3 304,256 - GFF627 0.74 -0.1 304,256 - GFF627 0.74 -0.7 304,523 - -0.4 304,523 - -0.0 304,741 + GFF628 0.26 -0.1 304,815 + GFF628 0.34 +0.3 304,903 + GFF628 0.43 -0.2 304,904 - GFF628 0.43 -0.2 304,904 - GFF628 0.43 +0.3 304,904 - GFF628 0.43 -2.1 304,996 + GFF628 0.52 -1.5 304,997 - GFF628 0.52 +1.4 304,997 - GFF628 0.52 +0.1 304,997 - GFF628 0.52 +0.5 305,129 - GFF628 0.66 +0.5 305,129 - GFF628 0.66 +0.2 305,147 - GFF628 0.68 +0.0 305,197 + GFF628 0.73 +0.1 305,197 + GFF628 0.73 +0.1 305,299 + GFF628 0.83 -0.1
Or see this region's nucleotide sequence