Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF59 and GFF60 are separated by 9 nucleotides GFF60 and GFF61 overlap by 4 nucleotides GFF61 and GFF62 are separated by 102 nucleotides
GFF59 - Tyrosine-protein kinase Wzc (EC 2.7.10.2), at 59,567 to 60,940
GFF59
GFF60 - Capsular polysaccharide biosynthesis/export periplasmic protein WcbA; Capsular polysaccharide export system protein KpsC, at 60,950 to 61,759
GFF60
GFF61 - hypothetical protein, at 61,756 to 62,721
GFF61
GFF62 - Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1), at 62,824 to 63,867
GFF62
Position (kb) 61
62
63 Strain fitness (log2 ratio) -1
0
1 at 60.825 kb on + strand at 61.173 kb on + strand, within GFF60 at 61.197 kb on + strand, within GFF60 at 61.198 kb on - strand, within GFF60 at 61.198 kb on - strand, within GFF60 at 61.221 kb on - strand, within GFF60 at 61.928 kb on + strand, within GFF61 at 62.352 kb on - strand, within GFF61 at 62.825 kb on + strand at 63.011 kb on + strand, within GFF62 at 63.011 kb on + strand, within GFF62 at 63.012 kb on - strand, within GFF62 at 63.012 kb on - strand, within GFF62 at 63.200 kb on + strand, within GFF62 at 63.201 kb on - strand, within GFF62 at 63.207 kb on - strand, within GFF62 at 63.207 kb on - strand, within GFF62 at 63.482 kb on + strand, within GFF62 at 63.482 kb on + strand, within GFF62 at 63.482 kb on + strand, within GFF62 at 63.482 kb on + strand, within GFF62 at 63.482 kb on + strand, within GFF62 at 63.483 kb on - strand, within GFF62 at 63.483 kb on - strand, within GFF62 at 63.483 kb on - strand, within GFF62 at 63.483 kb on - strand, within GFF62 at 63.696 kb on - strand, within GFF62
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 60,825 + -0.9 61,173 + GFF60 0.28 +0.3 61,197 + GFF60 0.30 +0.7 61,198 - GFF60 0.31 -0.4 61,198 - GFF60 0.31 -0.3 61,221 - GFF60 0.33 +1.1 61,928 + GFF61 0.18 +0.4 62,352 - GFF61 0.62 +0.4 62,825 + -0.1 63,011 + GFF62 0.18 +0.4 63,011 + GFF62 0.18 -0.4 63,012 - GFF62 0.18 -0.6 63,012 - GFF62 0.18 +1.1 63,200 + GFF62 0.36 +0.2 63,201 - GFF62 0.36 +0.0 63,207 - GFF62 0.37 +0.7 63,207 - GFF62 0.37 -0.8 63,482 + GFF62 0.63 +0.1 63,482 + GFF62 0.63 +0.3 63,482 + GFF62 0.63 +0.3 63,482 + GFF62 0.63 -0.5 63,482 + GFF62 0.63 +0.1 63,483 - GFF62 0.63 -0.5 63,483 - GFF62 0.63 -0.1 63,483 - GFF62 0.63 -0.1 63,483 - GFF62 0.63 -0.0 63,696 - GFF62 0.84 +0.8
Or see this region's nucleotide sequence