Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF600 and GFF601 are separated by 4 nucleotides GFF601 and GFF602 are separated by 91 nucleotides GFF602 and GFF603 overlap by 4 nucleotides
GFF600 - Phosphohydrolase (MutT/nudix family protein), at 274,869 to 275,486
GFF600
GFF601 - Transcriptional regulator, IclR family, at 275,491 to 276,252
GFF601
GFF602 - Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-), at 276,344 to 277,159
GFF602
GFF603 - Monooxygenase, flavin-binding family, at 277,156 to 278,469
GFF603
Position (kb) 276
277
278 Strain fitness (log2 ratio) -2
-1
0
1
2 at 275.442 kb on + strand at 275.481 kb on + strand at 275.481 kb on + strand at 275.482 kb on - strand at 275.909 kb on + strand, within GFF601 at 275.909 kb on + strand, within GFF601 at 275.909 kb on + strand, within GFF601 at 275.909 kb on + strand, within GFF601 at 275.910 kb on - strand, within GFF601 at 275.910 kb on - strand, within GFF601 at 276.060 kb on - strand, within GFF601 at 276.309 kb on + strand at 276.806 kb on + strand, within GFF602 at 276.836 kb on + strand, within GFF602 at 276.836 kb on + strand, within GFF602 at 276.902 kb on + strand, within GFF602 at 276.903 kb on - strand, within GFF602 at 277.318 kb on + strand, within GFF603 at 277.318 kb on + strand, within GFF603 at 277.423 kb on + strand, within GFF603 at 277.424 kb on - strand, within GFF603 at 277.424 kb on - strand, within GFF603 at 277.466 kb on - strand, within GFF603 at 277.573 kb on + strand, within GFF603 at 277.573 kb on + strand, within GFF603 at 277.670 kb on - strand, within GFF603 at 277.795 kb on + strand, within GFF603 at 277.798 kb on + strand, within GFF603 at 277.798 kb on + strand, within GFF603 at 277.813 kb on + strand, within GFF603 at 277.814 kb on - strand, within GFF603 at 277.814 kb on - strand, within GFF603 at 277.814 kb on - strand, within GFF603 at 277.814 kb on - strand, within GFF603 at 277.814 kb on - strand, within GFF603 at 277.814 kb on - strand, within GFF603 at 277.814 kb on - strand, within GFF603 at 277.948 kb on + strand, within GFF603 at 277.948 kb on + strand, within GFF603 at 277.949 kb on - strand, within GFF603 at 277.949 kb on - strand, within GFF603 at 277.949 kb on - strand, within GFF603 at 277.957 kb on + strand, within GFF603 at 277.957 kb on + strand, within GFF603 at 277.957 kb on + strand, within GFF603 at 277.957 kb on + strand, within GFF603 at 277.958 kb on - strand, within GFF603 at 277.993 kb on + strand, within GFF603 at 278.114 kb on - strand, within GFF603 at 278.114 kb on - strand, within GFF603 at 278.126 kb on - strand, within GFF603
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 275,442 + +0.0 275,481 + -1.7 275,481 + -1.8 275,482 - +0.9 275,909 + GFF601 0.55 -0.1 275,909 + GFF601 0.55 -0.9 275,909 + GFF601 0.55 +0.2 275,909 + GFF601 0.55 -0.3 275,910 - GFF601 0.55 -0.4 275,910 - GFF601 0.55 -0.1 276,060 - GFF601 0.75 +0.6 276,309 + -1.3 276,806 + GFF602 0.57 -0.4 276,836 + GFF602 0.60 -0.3 276,836 + GFF602 0.60 -0.1 276,902 + GFF602 0.68 -0.7 276,903 - GFF602 0.69 +0.4 277,318 + GFF603 0.12 -0.1 277,318 + GFF603 0.12 +0.7 277,423 + GFF603 0.20 +0.3 277,424 - GFF603 0.20 -0.4 277,424 - GFF603 0.20 +0.4 277,466 - GFF603 0.24 -0.2 277,573 + GFF603 0.32 +0.4 277,573 + GFF603 0.32 +0.9 277,670 - GFF603 0.39 -0.7 277,795 + GFF603 0.49 +2.5 277,798 + GFF603 0.49 +0.9 277,798 + GFF603 0.49 -1.3 277,813 + GFF603 0.50 -0.1 277,814 - GFF603 0.50 +1.2 277,814 - GFF603 0.50 +0.2 277,814 - GFF603 0.50 +0.8 277,814 - GFF603 0.50 -0.1 277,814 - GFF603 0.50 -0.2 277,814 - GFF603 0.50 -0.5 277,814 - GFF603 0.50 +0.5 277,948 + GFF603 0.60 +1.5 277,948 + GFF603 0.60 -0.2 277,949 - GFF603 0.60 +0.3 277,949 - GFF603 0.60 -0.3 277,949 - GFF603 0.60 -1.5 277,957 + GFF603 0.61 -0.0 277,957 + GFF603 0.61 +0.4 277,957 + GFF603 0.61 -0.0 277,957 + GFF603 0.61 -1.8 277,958 - GFF603 0.61 +0.9 277,993 + GFF603 0.64 -1.3 278,114 - GFF603 0.73 +0.2 278,114 - GFF603 0.73 -0.2 278,126 - GFF603 0.74 -0.1
Or see this region's nucleotide sequence