Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF583 and GFF584 are separated by 89 nucleotides GFF584 and GFF585 overlap by 4 nucleotides GFF585 and GFF586 are separated by 230 nucleotides
GFF583 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-), at 255,175 to 256,560
GFF583
GFF584 - Predicted nucleotidyltransferase, at 256,650 to 257,258
GFF584
GFF585 - Cytochrome c-type biogenesis protein ResA, at 257,255 to 257,782
GFF585
GFF586 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 258,013 to 258,477
GFF586
Position (kb) 256
257
258 Strain fitness (log2 ratio) -1
0
1 at 256.053 kb on - strand, within GFF583 at 256.457 kb on + strand at 256.548 kb on + strand at 256.571 kb on + strand at 256.571 kb on + strand at 256.572 kb on - strand at 256.572 kb on - strand at 256.572 kb on - strand at 256.599 kb on + strand at 256.728 kb on + strand, within GFF584 at 256.729 kb on - strand, within GFF584 at 256.974 kb on + strand, within GFF584 at 256.974 kb on + strand, within GFF584 at 256.974 kb on + strand, within GFF584 at 256.974 kb on + strand, within GFF584 at 256.974 kb on + strand, within GFF584 at 256.974 kb on + strand, within GFF584 at 256.974 kb on + strand, within GFF584 at 256.974 kb on + strand, within GFF584 at 256.974 kb on + strand, within GFF584 at 256.975 kb on - strand, within GFF584 at 256.975 kb on - strand, within GFF584 at 256.975 kb on - strand, within GFF584 at 256.975 kb on - strand, within GFF584 at 256.975 kb on - strand, within GFF584 at 256.975 kb on - strand, within GFF584 at 256.975 kb on - strand, within GFF584 at 256.975 kb on - strand, within GFF584 at 256.975 kb on - strand, within GFF584 at 256.975 kb on - strand, within GFF584 at 256.975 kb on - strand, within GFF584 at 256.975 kb on - strand, within GFF584 at 256.975 kb on - strand, within GFF584 at 256.975 kb on - strand, within GFF584 at 257.040 kb on + strand, within GFF584 at 257.040 kb on + strand, within GFF584 at 257.041 kb on - strand, within GFF584 at 257.041 kb on - strand, within GFF584 at 257.041 kb on - strand, within GFF584 at 257.041 kb on - strand, within GFF584 at 257.822 kb on + strand at 257.822 kb on + strand at 257.921 kb on + strand at 257.921 kb on + strand at 257.922 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 256,053 - GFF583 0.63 -0.8 256,457 + +0.2 256,548 + +0.4 256,571 + +0.3 256,571 + -1.0 256,572 - +0.1 256,572 - -0.2 256,572 - -0.2 256,599 + +0.7 256,728 + GFF584 0.13 +0.5 256,729 - GFF584 0.13 +1.1 256,974 + GFF584 0.53 +0.1 256,974 + GFF584 0.53 +0.1 256,974 + GFF584 0.53 +0.5 256,974 + GFF584 0.53 +0.1 256,974 + GFF584 0.53 -0.1 256,974 + GFF584 0.53 +1.5 256,974 + GFF584 0.53 -0.2 256,974 + GFF584 0.53 +0.3 256,974 + GFF584 0.53 +0.3 256,975 - GFF584 0.53 +0.5 256,975 - GFF584 0.53 +0.8 256,975 - GFF584 0.53 -0.0 256,975 - GFF584 0.53 +0.1 256,975 - GFF584 0.53 +0.4 256,975 - GFF584 0.53 +1.0 256,975 - GFF584 0.53 +0.4 256,975 - GFF584 0.53 -0.4 256,975 - GFF584 0.53 -0.1 256,975 - GFF584 0.53 +0.1 256,975 - GFF584 0.53 -0.1 256,975 - GFF584 0.53 -0.8 256,975 - GFF584 0.53 -0.1 256,975 - GFF584 0.53 -0.7 257,040 + GFF584 0.64 -0.2 257,040 + GFF584 0.64 -0.5 257,041 - GFF584 0.64 +1.1 257,041 - GFF584 0.64 +0.5 257,041 - GFF584 0.64 -0.0 257,041 - GFF584 0.64 +0.2 257,822 + -0.1 257,822 + +0.5 257,921 + +0.1 257,921 + +1.5 257,922 - -0.3
Or see this region's nucleotide sequence