Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5785

Experiment: Ying_all64 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 2
2,811,172	+				+0.3
2,811,173	-				-0.9
2,811,278	-				+0.8
2,811,332	-				-0.0
2,811,440	+				+0.3
2,811,518	-				-0.6
2,811,676	+		GFF5783	0.52	-1.2
2,811,677	-		GFF5783	0.52	+0.4
2,811,677	-		GFF5783	0.52	-1.0
2,811,827	-				-0.3
2,811,853	-				+0.4
2,811,853	-				-1.0
2,811,853	-				-0.7
2,812,105	+				+0.4
2,812,105	+				-0.6
2,812,105	+				-1.0
2,812,105	+				+0.3
2,812,105	+				+0.0
2,812,105	+				+0.2
2,812,105	+				-0.0
2,812,105	+				-0.1
2,812,105	+				+0.1
2,812,105	+				+0.0
2,812,105	+				-0.3
2,812,162	+				+0.3
2,812,162	+				-0.4
2,812,163	-				+0.4
2,812,453	+		GFF5785	0.29	+0.6
2,812,453	+		GFF5785	0.29	+0.3
2,812,454	-		GFF5785	0.29	+0.5
2,812,573	+		GFF5785	0.36	+0.4
2,812,574	-		GFF5785	0.36	-0.3
2,812,582	+		GFF5785	0.37	-0.5
2,812,582	+		GFF5785	0.37	-0.4
2,812,582	+		GFF5785	0.37	-0.5
2,812,582	+		GFF5785	0.37	+0.5
2,812,583	-		GFF5785	0.37	-0.1
2,812,583	-		GFF5785	0.37	-0.2
2,812,696	+		GFF5785	0.44	+0.5
2,812,702	+		GFF5785	0.45	-0.1
2,812,702	+		GFF5785	0.45	+2.0
2,812,702	+		GFF5785	0.45	-0.3
2,812,703	-		GFF5785	0.45	+0.1
2,812,756	+		GFF5785	0.48	-0.3
2,812,756	+		GFF5785	0.48	-1.9
2,812,757	-		GFF5785	0.48	-0.5
2,812,757	-		GFF5785	0.48	-0.2
2,812,757	-		GFF5785	0.48	+0.4
2,812,757	-		GFF5785	0.48	-0.2
2,812,757	-		GFF5785	0.48	+0.7
2,812,757	-		GFF5785	0.48	+0.2
2,812,757	-		GFF5785	0.48	-0.3
2,812,757	-		GFF5785	0.48	-0.2
2,812,789	+		GFF5785	0.50	-0.4
2,812,789	+		GFF5785	0.50	-0.4
2,812,789	+		GFF5785	0.50	-0.2
2,812,790	-		GFF5785	0.50	-0.5
2,812,790	-		GFF5785	0.50	-1.4
2,812,790	-		GFF5785	0.50	-2.0
2,812,795	+		GFF5785	0.51	-0.2
2,812,795	+		GFF5785	0.51	+1.4
2,812,795	+		GFF5785	0.51	+0.7
2,812,795	+		GFF5785	0.51	-0.2
2,812,796	-		GFF5785	0.51	-0.5
2,812,796	-		GFF5785	0.51	+0.1
2,812,796	-		GFF5785	0.51	-0.0
2,812,796	-		GFF5785	0.51	+0.8
2,812,843	+		GFF5785	0.54	-0.7
2,812,843	+		GFF5785	0.54	+0.6
2,812,843	+		GFF5785	0.54	-0.5
2,812,843	+		GFF5785	0.54	+0.5
2,812,843	+		GFF5785	0.54	-0.7
2,812,843	+		GFF5785	0.54	-0.1
2,812,843	+		GFF5785	0.54	-0.2
2,812,844	-		GFF5785	0.54	+0.1
2,812,844	-		GFF5785	0.54	-0.3
2,812,844	-		GFF5785	0.54	-1.0
2,812,844	-		GFF5785	0.54	-1.9
2,812,844	-		GFF5785	0.54	+0.0
2,812,924	-		GFF5785	0.59	+0.0
2,813,079	+		GFF5785	0.69	+0.4
2,813,079	+		GFF5785	0.69	+0.1
2,813,080	-		GFF5785	0.69	-0.2
2,813,080	-		GFF5785	0.69	-0.2
2,813,098	+		GFF5785	0.70	+0.2
2,813,098	+		GFF5785	0.70	+0.0
2,813,098	+		GFF5785	0.70	-0.1
2,813,098	+		GFF5785	0.70	+0.4
2,813,098	+		GFF5785	0.70	+0.8
2,813,099	-		GFF5785	0.71	-0.2
2,813,099	-		GFF5785	0.71	+0.0
2,813,099	-		GFF5785	0.71	+0.4
2,813,099	-		GFF5785	0.71	-0.2
2,813,099	-		GFF5785	0.71	+1.6
2,813,115	+		GFF5785	0.72	-0.1
2,813,115	+		GFF5785	0.72	+0.9
2,813,115	+		GFF5785	0.72	+0.5
2,813,116	-		GFF5785	0.72	+1.1
2,813,116	-		GFF5785	0.72	-0.1
2,813,116	-		GFF5785	0.72	+0.0
2,813,116	-		GFF5785	0.72	-0.1
2,813,116	-		GFF5785	0.72	-0.3
2,813,116	-		GFF5785	0.72	-0.2
2,813,201	-		GFF5785	0.77	+0.2
2,813,338	+		GFF5785	0.86	-0.6
2,813,338	+		GFF5785	0.86	-0.2
2,813,338	+		GFF5785	0.86	+0.6
2,813,338	+		GFF5785	0.86	+0.1
2,813,339	-		GFF5785	0.86	+1.2
2,813,339	-		GFF5785	0.86	+0.1
2,813,339	-		GFF5785	0.86	+0.2
2,813,339	-		GFF5785	0.86	-1.0
2,813,375	-		GFF5785	0.88	-0.5
2,813,375	-		GFF5785	0.88	+0.1
2,813,375	-		GFF5785	0.88	+0.2
2,813,375	-		GFF5785	0.88	-0.1
2,813,396	-		GFF5785	0.90	-0.9
2,813,396	-		GFF5785	0.90	-0.2