Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5721

Experiment: Ying_all64 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 2
2,748,996	+		GFF5720	0.12	-0.3
2,749,091	+		GFF5720	0.24	+0.5
2,749,091	+		GFF5720	0.24	-0.2
2,749,113	-		GFF5720	0.26	-0.9
2,749,113	-		GFF5720	0.26	-0.1
2,749,222	-		GFF5720	0.40	+0.5
2,749,223	+		GFF5720	0.40	-0.1
2,749,224	-		GFF5720	0.40	+0.4
2,749,224	-		GFF5720	0.40	+1.3
2,749,224	-		GFF5720	0.40	-0.6
2,749,246	+		GFF5720	0.43	-0.1
2,749,247	-		GFF5720	0.43	-0.7
2,749,275	+		GFF5720	0.47	-0.3
2,749,275	+		GFF5720	0.47	-0.2
2,749,322	+		GFF5720	0.52	+0.7
2,749,322	+		GFF5720	0.52	-1.3
2,749,322	+		GFF5720	0.52	-0.7
2,749,322	+		GFF5720	0.52	+0.5
2,749,322	+		GFF5720	0.52	+0.1
2,749,322	+		GFF5720	0.52	-0.5
2,749,322	+		GFF5720	0.52	+0.1
2,749,322	+		GFF5720	0.52	+0.4
2,749,322	+		GFF5720	0.52	-0.1
2,749,322	+		GFF5720	0.52	-0.0
2,749,322	+		GFF5720	0.52	-0.0
2,749,322	+		GFF5720	0.52	-0.4
2,749,323	-		GFF5720	0.53	+0.3
2,749,323	-		GFF5720	0.53	-0.2
2,749,323	-		GFF5720	0.53	+0.5
2,749,323	-		GFF5720	0.53	+0.2
2,749,323	-		GFF5720	0.53	+0.4
2,749,323	-		GFF5720	0.53	-0.7
2,749,323	-		GFF5720	0.53	+0.1
2,749,323	-		GFF5720	0.53	-0.0
2,749,323	-		GFF5720	0.53	+0.9
2,749,323	-		GFF5720	0.53	+0.6
2,749,323	-		GFF5720	0.53	-1.0
2,749,323	-		GFF5720	0.53	+0.8
2,749,481	+		GFF5720	0.72	-0.4
2,749,482	-		GFF5720	0.72	-0.4
2,749,482	-		GFF5720	0.72	-0.0
2,749,482	-		GFF5720	0.72	-1.6
2,749,482	-		GFF5720	0.72	+0.0
2,749,482	-		GFF5720	0.72	-0.0
2,749,548	-		GFF5720	0.81	+0.6
2,749,548	-		GFF5720	0.81	+0.7
2,749,855	+				+0.6
2,749,855	+				+0.1
2,749,855	+				-0.2
2,750,227	-		GFF5721	0.24	+0.4
2,750,227	-		GFF5721	0.24	+0.1
2,750,227	-		GFF5721	0.24	-0.2
2,750,227	-		GFF5721	0.24	-0.4
2,750,227	-		GFF5721	0.24	-1.7
2,750,365	-		GFF5721	0.31	-0.7
2,750,365	-		GFF5721	0.31	-1.2
2,750,467	-		GFF5721	0.36	-1.0
2,750,467	-		GFF5721	0.36	-1.7
2,751,120	+		GFF5721	0.70	-1.0
2,751,121	-		GFF5721	0.70	-1.2
2,751,531	+				+0.1
2,751,532	-				-0.0
2,751,824	+				-0.2
2,751,824	+				-0.5
2,751,974	+				-1.6
2,751,975	-				-1.1
2,751,975	-				-0.2
2,751,975	-				-0.4
2,752,279	+		GFF5722	0.26	+0.5
2,752,279	+		GFF5722	0.26	-0.2
2,752,279	+		GFF5722	0.26	-0.5
2,752,280	-		GFF5722	0.26	+0.6
2,752,280	-		GFF5722	0.26	-0.4
2,752,280	-		GFF5722	0.26	-0.1
2,752,280	-		GFF5722	0.26	-0.3
2,752,300	+		GFF5722	0.28	-0.5
2,752,300	+		GFF5722	0.28	+0.2
2,752,300	+		GFF5722	0.28	+0.4
2,752,301	-		GFF5722	0.28	-0.7
2,752,301	-		GFF5722	0.28	-0.1
2,752,405	+		GFF5722	0.38	-0.4
2,752,405	+		GFF5722	0.38	+1.0
2,752,405	+		GFF5722	0.38	-0.4
2,752,405	+		GFF5722	0.38	+1.4
2,752,508	-		GFF5722	0.48	+0.1
2,752,549	+		GFF5722	0.52	-0.7
2,752,549	+		GFF5722	0.52	-0.5
2,752,550	-		GFF5722	0.52	-0.2
2,752,550	-		GFF5722	0.52	+0.3