Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5574

Experiment: Ying_all64 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 2
2,584,231	-		GFF5573	0.52	-0.0
2,584,231	-		GFF5573	0.52	-0.2
2,584,231	-		GFF5573	0.52	+0.5
2,584,356	+		GFF5573	0.59	-1.6
2,584,356	+		GFF5573	0.59	-0.3
2,584,357	-		GFF5573	0.59	+0.4
2,584,443	+		GFF5573	0.64	-0.0
2,584,443	+		GFF5573	0.64	-0.9
2,584,444	-		GFF5573	0.64	-0.6
2,584,487	-		GFF5573	0.66	+0.7
2,584,507	+		GFF5573	0.67	+0.8
2,584,509	+		GFF5573	0.67	-0.3
2,584,509	+		GFF5573	0.67	+0.3
2,584,509	+		GFF5573	0.67	-0.7
2,584,509	+		GFF5573	0.67	+0.6
2,584,509	+		GFF5573	0.67	-0.5
2,584,509	+		GFF5573	0.67	-1.0
2,584,509	+		GFF5573	0.67	-0.7
2,584,509	+		GFF5573	0.67	+0.2
2,584,510	-		GFF5573	0.68	+0.1
2,584,510	-		GFF5573	0.68	-0.4
2,584,510	-		GFF5573	0.68	+0.0
2,584,510	-		GFF5573	0.68	-1.2
2,584,510	-		GFF5573	0.68	-0.5
2,584,510	-		GFF5573	0.68	-0.3
2,584,510	-		GFF5573	0.68	-0.8
2,584,518	+		GFF5573	0.68	+1.0
2,584,518	+		GFF5573	0.68	-0.6
2,584,519	-		GFF5573	0.68	+0.1
2,584,560	+		GFF5573	0.70	-0.4
2,584,560	+		GFF5573	0.70	-1.5
2,584,560	+		GFF5573	0.70	-1.0
2,584,560	+		GFF5573	0.70	-0.3
2,584,560	+		GFF5573	0.70	-0.4
2,584,560	+		GFF5573	0.70	+0.0
2,584,561	-		GFF5573	0.70	-0.9
2,584,561	-		GFF5573	0.70	+0.4
2,584,561	-		GFF5573	0.70	-0.2
2,584,561	-		GFF5573	0.70	-0.2
2,584,561	-		GFF5573	0.70	+0.3
2,584,561	-		GFF5573	0.70	+0.1
2,584,561	-		GFF5573	0.70	-0.0
2,584,561	-		GFF5573	0.70	-0.5
2,584,561	-		GFF5573	0.70	-0.3
2,584,561	-		GFF5573	0.70	+0.5
2,584,561	-		GFF5573	0.70	-0.9
2,584,686	+		GFF5573	0.77	+0.3
2,584,686	+		GFF5573	0.77	-1.3
2,584,687	-		GFF5573	0.77	-0.4
2,585,100	-				+0.2
2,585,371	+		GFF5574	0.40	+0.2
2,585,371	+		GFF5574	0.40	-0.3
2,585,371	+		GFF5574	0.40	-0.4
2,585,371	+		GFF5574	0.40	-0.2
2,585,371	+		GFF5574	0.40	-1.3
2,585,371	+		GFF5574	0.40	+0.7
2,585,372	-		GFF5574	0.40	-1.3
2,585,372	-		GFF5574	0.40	-1.2
2,585,372	-		GFF5574	0.40	+0.6
2,585,398	+		GFF5574	0.45	-0.6
2,585,398	+		GFF5574	0.45	-0.5
2,585,401	+		GFF5574	0.45	-0.7
2,585,402	-		GFF5574	0.45	+0.0
2,585,402	-		GFF5574	0.45	-1.1
2,585,402	-		GFF5574	0.45	-0.0
2,585,402	-		GFF5574	0.45	-0.6
2,585,402	-		GFF5574	0.45	-1.4
2,585,566	+		GFF5574	0.72	-0.7
2,585,567	-		GFF5574	0.73	+0.3
2,585,567	-		GFF5574	0.73	+0.3
2,585,567	-		GFF5574	0.73	+0.3
2,585,567	-		GFF5574	0.73	-2.3
2,585,567	-		GFF5574	0.73	+0.3
2,585,567	-		GFF5574	0.73	+0.1
2,585,611	+		GFF5574	0.80	-0.4
2,585,611	+		GFF5574	0.80	+0.0
2,585,612	-		GFF5574	0.80	-0.3
2,585,612	-		GFF5574	0.80	-0.4
2,585,721	+				+1.1
2,585,721	+				-0.6
2,585,721	+				-0.0
2,585,722	-				-0.7
2,585,722	-				+0.4
2,585,722	-				+0.5
2,585,722	-				+0.3
2,585,722	-				-1.4
2,585,722	-				-0.7
2,585,742	+				-1.0
2,585,743	-				-0.6
2,585,743	-				+0.3
2,585,743	-				-0.2
2,585,743	-				-1.6
2,585,784	+				+0.8
2,585,784	+				-1.3
2,585,784	+				+0.4
2,585,785	-				+0.4
2,585,823	+				+0.2
2,585,823	+				-0.3
2,585,824	-				-0.3
2,585,824	-				+0.3
2,585,824	-				+0.2
2,585,824	-				-0.4
2,585,830	+				-0.0
2,585,830	+				-0.2
2,585,846	+				-0.3
2,585,847	+				+0.4
2,585,847	+				+2.0
2,585,847	+				+0.9
2,585,847	+				+0.3
2,585,847	+				+0.1
2,585,847	+				-0.0
2,585,847	+				+0.6
2,585,847	+				+0.4
2,585,847	+				-0.4
2,585,847	+				+0.6
2,585,848	-				+0.4
2,585,848	-				+0.0
2,585,848	-				+0.3
2,585,848	-				+0.3
2,585,848	-				+0.4
2,585,848	-				+0.8
2,585,848	-				+0.4
2,585,848	-				+0.6
2,585,848	-				-0.2
2,585,848	-				-0.5
2,585,848	-				+0.4
2,585,889	-				+0.4
2,585,889	-				+0.2