Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5181

Experiment: Ying_all64 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 2
2,195,925	+		GFF5180	0.20	+0.1
2,195,925	+		GFF5180	0.20	-0.2
2,195,925	+		GFF5180	0.20	-0.3
2,195,926	-		GFF5180	0.20	-0.4
2,195,926	-		GFF5180	0.20	-0.1
2,195,926	-		GFF5180	0.20	+1.0
2,195,926	-		GFF5180	0.20	+0.1
2,195,926	-		GFF5180	0.20	-0.6
2,195,926	-		GFF5180	0.20	+1.4
2,195,926	-		GFF5180	0.20	-0.6
2,195,988	+		GFF5180	0.29	-1.4
2,195,988	+		GFF5180	0.29	-0.4
2,195,988	+		GFF5180	0.29	-0.7
2,195,988	+		GFF5180	0.29	-0.2
2,195,989	-		GFF5180	0.29	-0.2
2,195,989	-		GFF5180	0.29	+1.2
2,195,989	-		GFF5180	0.29	-1.2
2,195,989	-		GFF5180	0.29	-0.3
2,195,989	-		GFF5180	0.29	+0.3
2,196,097	-		GFF5180	0.45	+0.3
2,196,285	+		GFF5180	0.72	-0.0
2,196,285	+		GFF5180	0.72	+0.1
2,196,285	+		GFF5180	0.72	-0.3
2,196,286	-		GFF5180	0.72	+0.2
2,196,286	-		GFF5180	0.72	+0.2
2,196,399	+		GFF5180	0.88	+0.6
2,196,399	+		GFF5180	0.88	+0.3
2,196,400	-		GFF5180	0.88	-1.0
2,196,450	+				+0.4
2,196,489	+				+0.5
2,196,489	+				+0.7
2,196,489	+				+0.4
2,196,489	+				+0.3
2,196,490	-				-0.5
2,196,490	-				-0.3
2,196,856	+		GFF5181	0.25	+0.2
2,196,856	+		GFF5181	0.25	-0.3
2,196,988	+		GFF5181	0.39	-0.0
2,196,988	+		GFF5181	0.39	-0.2
2,196,989	-		GFF5181	0.39	-0.3
2,196,989	-		GFF5181	0.39	-0.7
2,197,150	+		GFF5181	0.56	+0.3
2,197,451	-		GFF5181	0.87	-0.6
2,197,451	-		GFF5181	0.87	+0.3
2,197,451	-		GFF5181	0.87	+0.5
2,197,451	-		GFF5181	0.87	-0.3
2,197,451	-		GFF5181	0.87	-0.3
2,197,567	+				-0.2
2,197,567	+				+1.2
2,197,572	-				-1.2
2,197,572	-				-0.2
2,197,572	-				+0.6
2,197,596	+				-0.2
2,197,597	-				-0.6
2,197,597	-				+0.3
2,197,597	-				+1.0
2,197,880	+		GFF5182	0.21	-0.0
2,197,880	+		GFF5182	0.21	+0.1
2,197,881	-		GFF5182	0.21	+0.5
2,197,881	-		GFF5182	0.21	+0.6
2,197,881	-		GFF5182	0.21	+0.6
2,197,881	-		GFF5182	0.21	-1.9